Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305H10f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49740.1 68414.m05578 expressed protein similar to MAP3K-like...    29   1.9  
At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR...    28   4.4  
At4g32630.1 68417.m04645 hypothetical protein                          27   7.7  

>At1g49740.1 68414.m05578 expressed protein similar to MAP3K-like
           protein kinase GB:CAB16796 GI:4006878 from [Arabidopsis
           thaliana]
          Length = 359

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = -1

Query: 344 AFAEINELSKI--LMLSPILGQDVIVTLLHNGYRSFKLEI 231
           +FA + E+S+    +L+P   QD I + L+NG R F L++
Sbjct: 86  SFARLGEVSRTGSAILAPTNQQDSITSQLNNGVRGFMLDM 125


>At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1046

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +2

Query: 110 ILEIPGVSAKFTKVQNYWHTYCLCAQIFKTDLHV 211
           ++EIP   +   K++N W +YC+  Q+    +++
Sbjct: 662 LVEIPSSFSHLHKLKNLWMSYCINLQVIPAHMNL 695


>At4g32630.1 68417.m04645 hypothetical protein 
          Length = 531

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = -2

Query: 514 PNNNKYDLQNVCHVRSTSDHTAVH*ILQSHYVLISSTQGIFRCSIPIIKADQSTADPLLP 335
           P  N Y+L N   + ST ++TAV+   Q+   +  S    F  S     A   ++ P++P
Sbjct: 320 PGTNNYELWNTSDISSTENYTAVNLGTQTMPGIPDSVTS-FATSPTTAHAHSGSSGPVVP 378


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,953,204
Number of Sequences: 28952
Number of extensions: 186954
Number of successful extensions: 343
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)