Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305H09f
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch...   159   1e-40
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac...   157   6e-40
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    33   0.027
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    29   0.34 
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    26   2.4  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    25   5.5  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    25   5.5  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    25   7.3  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    25   7.3  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    25   7.3  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    24   9.6  

>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 127

 Score =  159 bits (387), Expect = 1e-40
 Identities = 72/122 (59%), Positives = 96/122 (78%)
 Frame = +1

Query: 37  IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 216
           I+KKRTK F RHQSDR+ ++  +WRKPRGID+ VRRRF+G   MP IGYG+NKKTR+ +P
Sbjct: 6   IIKKRTKPFKRHQSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65

Query: 217 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLRS 396
           NG +  LV NV ++E+L+M N+ Y AEIA  VS++KR  IVE+A+ L ++VTNA A++RS
Sbjct: 66  NGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVSARKRVEIVEKARALGVKVTNAGAKVRS 125

Query: 397 QE 402
           QE
Sbjct: 126 QE 127


>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score =  157 bits (382), Expect = 6e-40
 Identities = 72/122 (59%), Positives = 95/122 (77%)
 Frame = +1

Query: 37  IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 216
           IVKKRTK F RHQSD + ++  +WRKPRGID+ VRRRF+G   MP IGYG+NKKTR+ +P
Sbjct: 6   IVKKRTKPFKRHQSDLFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65

Query: 217 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLRS 396
           NG +  LV NV ++E+L+M N+ Y AEIA  VS++KR  IVE+A+ L ++VTNA A++RS
Sbjct: 66  NGLKAFLVRNVSDVELLLMHNKTYAAEIASNVSARKRVEIVEKARALGVKVTNAGAKVRS 125

Query: 397 QE 402
           QE
Sbjct: 126 QE 127


>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 32.7 bits (71), Expect = 0.027
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
 Frame = -2

Query: 252 FNIVN*DLTESIWEHMTGLLVGTVTDVGHQVLTLESPADSVVNTSRF-TPIPLKFV--IA 82
           F+I + D+ ++   H+ G+   T  + G + +T     DS +    + TP+P+KFV  IA
Sbjct: 381 FDIRSPDIVQAYDHHLGGINSITFLENGKRFVTTSD--DSSMRFWEYGTPVPIKFVADIA 438

Query: 81  IRLMPDKSLRP 49
           +  MP  +LRP
Sbjct: 439 MHSMPRVALRP 449


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 29.1 bits (62), Expect = 0.34
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 405 VLLGPEASGRIRHSDAELLGSFHDQLPLLRRDTVSDLCAVL 283
           VL   +   R+ HSD + + +F DQ   +RR  +  LC +L
Sbjct: 139 VLKNSKQISRLIHSDVQNISNFFDQNFGIRRSNIYQLCLLL 179


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 11/66 (16%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +1

Query: 217 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKL--IVERAQQLSIRVTNAAARL 390
           N  R+  +HN++ ++ L+ Q  ++C +    V     ++  ++  A ++ + + ++A   
Sbjct: 595 NALREWFLHNIESIDQLIAQAHEFCIDSGSRVQELPLEVLDVIMEANEVILAIQSSALAY 654

Query: 391 RSQENE 408
           R +  +
Sbjct: 655 RRESQK 660


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 61  FIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 186
           F  H  D YD+L  NW++   ++    +RFK      NI  G
Sbjct: 822 FCVHTRDVYDELVPNWKETYQMEITNVKRFKLIIYQRNIHTG 863


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +1

Query: 76  SDRYDKLKRN-WRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVK 252
           + R D++  N  RK  G+  +    F    L  NIGYG+ K +   +    +K  +H++ 
Sbjct: 504 NQRLDQITLNSLRKAIGVVPQDTPLFNDTILY-NIGYGNPKASNDEIVEAAKKAKIHDII 562

Query: 253 E 255
           E
Sbjct: 563 E 563


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 28  RPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNI 177
           R T VK+R K  I+  S+    +     KP G   R R+  K  Y +P +
Sbjct: 540 RETKVKRRRKARIQETSEESTVVNEPNEKPDGRSRRERK--KVNYALPGL 587


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +3

Query: 270 DAKQEVLRRDRSRCLFEEAEADRGKSPAAQHQSDECGRSPPVPG 401
           D K+    R+      +E  A   K P   + S  C R+PP  G
Sbjct: 125 DKKRRAAERENKNSSVKETAAPI-KQPKNANSSSTCTRTPPTSG 167


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +1

Query: 289 CAEIAHGVSSKKRKLIVERAQQLSIRVTN 375
           C  + HGV   + K ++ER    +   +N
Sbjct: 135 CQPVRHGVVDSETKFVIERKDSFTFLASN 163


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +3

Query: 231 GPSSQC*RAGNLDDAKQEVLRRDRSRC-LFEEAEADRGKSPAAQHQSDECGRSPPVP 398
           GP  Q  R  + ++AK++ ++ +R       ++EA++ K P+ + +    GR+PP P
Sbjct: 645 GPIRQ--RYLDAEEAKRQKVQAEREAAKAATKSEAEKQK-PSGKFEEGTGGRAPPPP 698


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,762,717
Number of Sequences: 5004
Number of extensions: 34465
Number of successful extensions: 104
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)