Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305H09f
(457 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 188 1e-48
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 169 7e-43
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 162 1e-40
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078... 130 4e-31
12_02_1193 + 26891619-26892456,26892545-26893884 29 2.3
08_02_1238 + 25486263-25487574,25488210-25489117 28 3.1
01_06_1513 - 37884198-37884485,37884966-37886951,37886976-378873... 28 3.1
03_02_0203 + 6370729-6370850,6371213-6371391,6371516-6371625,637... 27 5.4
12_02_0542 - 20166044-20166111,20166399-20166526,20166613-201666... 27 7.2
07_03_0808 - 21668100-21669092 27 7.2
04_04_0687 - 27262742-27262784,27263429-27263584,27263698-272637... 27 7.2
03_05_0796 + 27787401-27788831 27 7.2
05_03_0653 + 16617121-16617359,16618892-16618955,16619455-166194... 27 9.5
>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
Length = 133
Score = 188 bits (459), Expect = 1e-48
Identities = 93/134 (69%), Positives = 107/134 (79%)
Frame = +1
Query: 7 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 186
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 187 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 366
S+KKTRH LPN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I
Sbjct: 60 SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEIVERAAQLDIV 119
Query: 367 VTNAAARLRSQENE 408
VTN ARLRSQE+E
Sbjct: 120 VTNKLARLRSQEDE 133
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 169 bits (412), Expect = 7e-43
Identities = 82/122 (67%), Positives = 97/122 (79%)
Frame = +1
Query: 7 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 186
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 187 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 366
S+KKTRH LPN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I
Sbjct: 60 SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIV 119
Query: 367 VT 372
++
Sbjct: 120 IS 121
>08_02_1315 +
26083856-26083945,26084093-26084226,26084753-26084819,
26085011-26085192,26085315-26085444
Length = 200
Score = 162 bits (394), Expect = 1e-40
Identities = 76/102 (74%), Positives = 87/102 (85%)
Frame = +1
Query: 103 NWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNR 282
+WR+P+GID+RVRR+FKG LMPNIGYGS+KKTRH LPN F+K +VHNV ELE+LMM NR
Sbjct: 99 SWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 158
Query: 283 KYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLRSQENE 408
YCAEIAH VS+KKRK IVERA QL I VTN ARLRSQE+E
Sbjct: 159 TYCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLARLRSQEDE 200
Score = 29.9 bits (64), Expect = 1.0
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +1
Query: 7 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 99
MA+ P+ IVKKR K+F R SDRY LK
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYLCLK 30
>09_04_0630 +
19104678-19105463,19106169-19106348,19107775-19107864,
19108777-19108958,19109968-19109974,19111763-19111833,
19112188-19112224,19112433-19112603
Length = 507
Score = 130 bits (315), Expect = 4e-31
Identities = 61/94 (64%), Positives = 74/94 (78%)
Frame = +1
Query: 1 YKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIG 180
Y+M + P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIG
Sbjct: 321 YEMVV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIG 379
Query: 181 YGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNR 282
YGS+KKTRH LPN F+K +VHNV ELE+LMM NR
Sbjct: 380 YGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 413
>12_02_1193 + 26891619-26892456,26892545-26893884
Length = 725
Score = 28.7 bits (61), Expect = 2.3
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Frame = +3
Query: 135 SPQAIQGSILDAQHRLRFQQEDPSYAPKWIP*GPSSQC*RAGNLDDAKQEVLRRDRSRCL 314
+PQ +Q R+R Q + APK PSS A + DDA++ +R
Sbjct: 327 NPQKADDEAGPSQKRMRGQVK---LAPKKRRVPPSSDS-DADDEDDAEEHDGEEEREEEE 382
Query: 315 FEEAEADRGKSPAAQHQSDECGRSP-PVPG 401
EA AD+ A + ++D G +P P PG
Sbjct: 383 EVEAVADKATGEAVEDRADTPGYTPTPGPG 412
>08_02_1238 + 25486263-25487574,25488210-25489117
Length = 739
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Frame = -2
Query: 348 GSFHDQLPLL----RRDTVSDLCAVLPVLHHQ 265
G+ H+Q P L RRD V+D+ A L +HH+
Sbjct: 466 GAVHEQRPALSWESRRDIVADVAAGLHYVHHE 497
>01_06_1513 -
37884198-37884485,37884966-37886951,37886976-37887305,
37887397-37887471,37887543-37887734,37887922-37888173,
37888248-37888803,37888881-37889088,37889624-37889736,
37890029-37890060,37890545-37890619
Length = 1368
Score = 28.3 bits (60), Expect = 3.1
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Frame = +1
Query: 97 KRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVL---VHNVKEL--- 258
+ N +K +G D + G P ++K+R + NGFRKV HN L
Sbjct: 248 RENKQKVKGSDPVKKTTHVGD--KPRCDVQESEKSRRVGNNGFRKVCFWQFHNFHMLLGS 305
Query: 259 EILMMQNRKYCAEIAH 306
++L+ N KY A H
Sbjct: 306 DLLIFSNEKYMAVSLH 321
>03_02_0203 +
6370729-6370850,6371213-6371391,6371516-6371625,
6372721-6373575
Length = 421
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 300 RSRCLFEEAEADRGKSPAAQHQSDECGRSPPVP 398
RS ++A+RG SPAA H D SP P
Sbjct: 40 RSSTSRRHSDANRGNSPAAPHSLDIYISSPAAP 72
>12_02_0542 -
20166044-20166111,20166399-20166526,20166613-20166686,
20166934-20166995,20167903-20168098,20168106-20169086
Length = 502
Score = 27.1 bits (57), Expect = 7.2
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +3
Query: 231 GPSSQC*RAGNLDDAKQEVLRRDRSRCLFEEAEAD-RGKSPAAQHQSDE 374
GP S G LD K V RRD +R L +A + AA SDE
Sbjct: 35 GPGSFADEHGELDQEKFAVSRRDAARRLIAAVDATLLARRAAAGEGSDE 83
>07_03_0808 - 21668100-21669092
Length = 330
Score = 27.1 bits (57), Expect = 7.2
Identities = 21/74 (28%), Positives = 26/74 (35%)
Frame = +3
Query: 171 QHRLRFQQEDPSYAPKWIP*GPSSQC*RAGNLDDAKQEVLRRDRSRCLFEEAEADRGKSP 350
QH+ + PS AP+ P P S R + + R RS C A K
Sbjct: 149 QHQPALRHLPPSTAPRRTPPPPGSASPRPSSPESFSSATGARFRSTCFSTRYSAIPSKKE 208
Query: 351 AAQHQSDECGRSPP 392
A S R PP
Sbjct: 209 A--RSSSPASREPP 220
>04_04_0687 -
27262742-27262784,27263429-27263584,27263698-27263783,
27263881-27264188,27265337-27265455,27265989-27266075,
27266440-27266546
Length = 301
Score = 27.1 bits (57), Expect = 7.2
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 399 LGPEASGRIRHSDAELLGSFHDQL 328
L PE S R +S A+LL FH QL
Sbjct: 30 LNPETSARAANSFAKLLARFHVQL 53
>03_05_0796 + 27787401-27788831
Length = 476
Score = 27.1 bits (57), Expect = 7.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 321 EAEADRGKSPAAQHQSDECGR 383
+ ++D GK QH+ DECG+
Sbjct: 393 DGDSDVGKMKIVQHKCDECGK 413
>05_03_0653 +
16617121-16617359,16618892-16618955,16619455-16619485,
16619577-16619848,16620528-16620633,16620715-16620872,
16621527-16621714,16621786-16621855,16622814-16622984,
16624363-16624838,16625625-16625871,16626158-16626490,
16627329-16627412,16627751-16627843,16627966-16628025,
16628582-16628680,16628830-16628970,16629207-16629287,
16629895-16629966,16631160-16631231,16632083-16632176,
16632257-16632339,16632455-16632532,16632914-16632970,
16633055-16633132,16633236-16633357,16633463-16633623,
16634419-16634495,16634570-16634683,16634857-16634958,
16635368-16635436,16635437-16635577,16635936-16636109,
16636934-16637063,16637137-16637276,16637369-16637446,
16637813-16637911,16638408-16638803
Length = 1749
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 222 SIWEHMTGLLVGTVTDVGHQVLTLES 145
SIW +GLL+ TD GH VL+ S
Sbjct: 125 SIWPLPSGLLLQKSTDGGHMVLSSTS 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,708,577
Number of Sequences: 37544
Number of extensions: 238855
Number of successful extensions: 859
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -