Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305H09f
         (457 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)             219   7e-58
SB_24924| Best HMM Match : WHEP-TRS (HMM E-Value=1.1)                  30   0.79 
SB_10798| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_13751| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8)                   28   3.2  
SB_37512| Best HMM Match : DnaJ (HMM E-Value=1.3e-29)                  28   4.2  
SB_30037| Best HMM Match : ANATO (HMM E-Value=0.035)                   27   5.6  
SB_42624| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  

>SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score =  219 bits (536), Expect = 7e-58
 Identities = 100/132 (75%), Positives = 117/132 (88%)
 Frame = +1

Query: 13  IRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSN 192
           + PV RP I+KKR K+FIRHQSDRY ++  +WRKP+GIDNRVRRRFKGQYLMPNIGYGSN
Sbjct: 2   VMPVNRPRILKKRQKKFIRHQSDRYMRVGESWRKPKGIDNRVRRRFKGQYLMPNIGYGSN 61

Query: 193 KKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 372
           KKTR ++P+GF+K +VHNVKELE+LMM NR Y AEIAH VSS+KRK IVERAQQLSI+VT
Sbjct: 62  KKTRFLMPDGFKKFVVHNVKELEVLMMMNRSYAAEIAHNVSSRKRKAIVERAQQLSIKVT 121

Query: 373 NAAARLRSQENE 408
           N+ ARLRS+ENE
Sbjct: 122 NSNARLRSEENE 133


>SB_24924| Best HMM Match : WHEP-TRS (HMM E-Value=1.1)
          Length = 1002

 Score = 30.3 bits (65), Expect = 0.79
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 276 KQEVLRRDRSRCLFEEAEADRGKSPAAQHQSDECGRSPPVPGER 407
           +Q ++   R  C   +A    G  P+  H+  + GR  PVPG+R
Sbjct: 774 QQRLIEHHRKNCPRLQATIRFGPDPSVAHRYRKQGRPVPVPGKR 817


>SB_10798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 888

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 270 DAKQ-EVLRRDRSRCLFEEAEADRGKSPAAQHQSDECGRSPPVPGER 407
           D+KQ EV R +    +F+ A      S    H+  + GR  PVPG+R
Sbjct: 662 DSKQLEVFREEWDGVVFDAAIEKAHPSDIVAHRYRKQGRPVPVPGKR 708


>SB_13751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 20/78 (25%), Positives = 35/78 (44%)
 Frame = +1

Query: 1   YKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIG 180
           YK++ +P  +P  +     + +   SD+ DK+K    K +    RV    KG+     +G
Sbjct: 15  YKISAKPKSKPAPLDISAAQAMTSNSDKNDKMKVTTPKSKLGHRRVDE--KGETTYKKVG 72

Query: 181 YGSNKKTRHMLPNGFRKV 234
             S K  R +L   F ++
Sbjct: 73  RLSAKPERDVLMQDFAQI 90


>SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8)
          Length = 361

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 366 SDAELLGSFHDQLPLLRRDTVSDLCAVLPVLHH 268
           S+ E  GSF D++   RRDT S +C    +L H
Sbjct: 300 SETERGGSFLDEVASPRRDTASPVCLWGAILFH 332


>SB_37512| Best HMM Match : DnaJ (HMM E-Value=1.3e-29)
          Length = 291

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = +1

Query: 193 KKTRHMLPN-GFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRV 369
           K+ +H+L N  F  VLV +++E E    Q ++   EIA  + ++  +L  E ++ L  + 
Sbjct: 93  KQEKHLLYNLEFSPVLVLDLEESEKSAKQEKESDEEIARRLQAEIERLREEGSRLLQEQQ 152

Query: 370 TNAAARLRSQENE 408
               A++R +E +
Sbjct: 153 ELLKAQIREEEQK 165


>SB_30037| Best HMM Match : ANATO (HMM E-Value=0.035)
          Length = 124

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 334 SASASSKRHRERSLRSTSCFASSRFPAL*HCEL 236
           S   + +R  +RS + ++C AS R P+   CEL
Sbjct: 21  STEHAYQRRTKRSSKESACCASGRMPSRARCEL 53


>SB_42624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 270 DAKQ-EVLRRDRSRCLFEEAEADRGKSPAAQHQSDECGRSPPVPGER 407
           D+KQ EV R +     F+ A      S    H+  + GR  PVPG+R
Sbjct: 170 DSKQLEVFREEWDGVAFDAAIEQVHPSHIVAHRYRKKGRPVPVPGKR 216


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,286,730
Number of Sequences: 59808
Number of extensions: 268784
Number of successful extensions: 1146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)