Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305H09f
(457 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g18100.1 68417.m02692 60S ribosomal protein L32 (RPL32A) ribo... 190 5e-49
At5g46430.2 68418.m05716 60S ribosomal protein L32 (RPL32B) 186 5e-48
At5g46430.1 68418.m05715 60S ribosomal protein L32 (RPL32B) 186 5e-48
At1g53920.1 68414.m06138 GDSL-motif lipase/hydrolase family prot... 29 2.0
At5g51860.1 68418.m06429 MADS-box protein (AGL72) contains Pfam ... 28 3.4
At4g07670.1 68417.m01203 protease-associated (PA) domain-contain... 27 4.5
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d... 27 6.0
At2g34240.1 68415.m04189 hypothetical protein contains Pfam prof... 27 6.0
At4g14740.2 68417.m02267 expressed protein 27 7.9
At4g14740.1 68417.m02266 expressed protein 27 7.9
At3g22810.1 68416.m02875 expressed protein ; expression support... 27 7.9
>At4g18100.1 68417.m02692 60S ribosomal protein L32 (RPL32A)
ribosomal protein L32, human, PIR1:R5HU32
Length = 133
Score = 190 bits (462), Expect = 5e-49
Identities = 89/134 (66%), Positives = 108/134 (80%)
Frame = +1
Query: 7 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 186
MA+ P+ +VKKR+ +FIR QSDR +K +WR+P+GID+RVRR+FKG LMPN+GYG
Sbjct: 1 MAV-PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYG 59
Query: 187 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 366
S+KKTRH LPNGF+K +VHN ELE+LMM NR YCAEIAH VS+KKRK IVERA QL +
Sbjct: 60 SDKKTRHYLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVV 119
Query: 367 VTNAAARLRSQENE 408
VTN ARLRSQE+E
Sbjct: 120 VTNRLARLRSQEDE 133
>At5g46430.2 68418.m05716 60S ribosomal protein L32 (RPL32B)
Length = 133
Score = 186 bits (454), Expect = 5e-48
Identities = 86/134 (64%), Positives = 107/134 (79%)
Frame = +1
Query: 7 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 186
MA+ P+ +VKKR+ +FIR QSDR +K +WR+P+GID+RVRR+FKG LMPN+GYG
Sbjct: 1 MAV-PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYG 59
Query: 187 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 366
S+KKTRH LPNGF+K +VHN ELE+LMM NR YCAEIAH +S+KKRK IVERA QL +
Sbjct: 60 SDKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVV 119
Query: 367 VTNAAARLRSQENE 408
V+N RLRSQE+E
Sbjct: 120 VSNKLGRLRSQEDE 133
>At5g46430.1 68418.m05715 60S ribosomal protein L32 (RPL32B)
Length = 133
Score = 186 bits (454), Expect = 5e-48
Identities = 86/134 (64%), Positives = 107/134 (79%)
Frame = +1
Query: 7 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 186
MA+ P+ +VKKR+ +FIR QSDR +K +WR+P+GID+RVRR+FKG LMPN+GYG
Sbjct: 1 MAV-PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYG 59
Query: 187 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 366
S+KKTRH LPNGF+K +VHN ELE+LMM NR YCAEIAH +S+KKRK IVERA QL +
Sbjct: 60 SDKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVV 119
Query: 367 VTNAAARLRSQENE 408
V+N RLRSQE+E
Sbjct: 120 VSNKLGRLRSQEDE 133
>At1g53920.1 68414.m06138 GDSL-motif lipase/hydrolase family protein
similar to Anther-specific proline-rich proteins
SP|P40603 SP|P40602 from {Arabidopsis thaliana};
contains Pfam profile PF00657: GDSL-like
Lipase/Acylhydrolase
Length = 385
Score = 28.7 bits (61), Expect = 2.0
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +1
Query: 64 IRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPN 219
+R Q D Y K++R WR G + +R + YL I GSN + L N
Sbjct: 146 LRTQLDHYKKVERLWRTNFGKEESKKRISRAVYL---ISIGSNDYSSIFLTN 194
>At5g51860.1 68418.m06429 MADS-box protein (AGL72) contains Pfam
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain);
Length = 211
Score = 27.9 bits (59), Expect = 3.4
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +1
Query: 220 GFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLRSQ 399
G +K +V VK++E+L + NRK + S K+ I + ++ V A+L
Sbjct: 90 GLKKEMVTMVKKIEVLEVHNRKMMGQSLDSCSVKELSEIATQIEKSLHMVRLRKAKLYED 149
Query: 400 E 402
E
Sbjct: 150 E 150
>At4g07670.1 68417.m01203 protease-associated (PA) domain-containing
protein similar to PF02225: PA domain; similar to
N-acetylated-alpha-linked acidic dipeptidase II
(NAALADase II) (SP:Q9Y3Q) {Homo sapiens};similar to
Glutamate carboxypeptidase II (Membrane glutamate
carboxypeptidase) (mGCP) (N-acetylated-alpha-linked
acidic dipeptidase I) (NAALADase I)
(Pteroylpoly-gamma-glutamate
carboxypeptidase)(Folylpoly-gamma-glutamate
carboxypeptidase) (FGCP) (Folate hydrolase 1)
(Prostate-specific membrane antigen homolog) (SP|O77564)
{Sus scrofa}
Length = 280
Score = 27.5 bits (58), Expect = 4.5
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 10 AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPR 120
A+ P ++ + +K +++H + R DKL++ KPR
Sbjct: 194 AVDPNSGTAVLMEASKSYLQHIAQRLDKLQKRGWKPR 230
>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam domain
PF04931: DNA polymerase V
Length = 1306
Score = 27.1 bits (57), Expect = 6.0
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 229 KVLVHNVKELEILMMQNRKYCAEIAHGVSSKK 324
K LV N+ E ++ Q RK+C I VSS K
Sbjct: 1242 KELVGNMPEAKVRRAQVRKFCGRIFQMVSSLK 1273
>At2g34240.1 68415.m04189 hypothetical protein contains Pfam
profiles PF04780: Protein of unknown function (DUF629),
PF04781: Protein of unknown function (DUF627)
Length = 712
Score = 27.1 bits (57), Expect = 6.0
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 52 TKRFIRHQSDRY-DKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFR 228
+++ I + ++Y DK+K ++ K + N +R R+ ++ + Y RH+L N +
Sbjct: 216 SRKLIDYVENKYVDKVKEDFGKCVSVANNLRWRYWKCHICSQVYYCFTDCQRHILDNHVQ 275
Query: 229 K 231
K
Sbjct: 276 K 276
>At4g14740.2 68417.m02267 expressed protein
Length = 475
Score = 26.6 bits (56), Expect = 7.9
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = -2
Query: 399 LGPEASGRIRHSDAELLGSFHDQLPLL--RRDTVSDLC 292
+ P SGR+ HS L GS D P+ D + C
Sbjct: 107 VSPRTSGRLSHSSGPLNGSLTDSPPVSPPESDDIKQFC 144
>At4g14740.1 68417.m02266 expressed protein
Length = 475
Score = 26.6 bits (56), Expect = 7.9
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = -2
Query: 399 LGPEASGRIRHSDAELLGSFHDQLPLL--RRDTVSDLC 292
+ P SGR+ HS L GS D P+ D + C
Sbjct: 107 VSPRTSGRLSHSSGPLNGSLTDSPPVSPPESDDIKQFC 144
>At3g22810.1 68416.m02875 expressed protein ; expression supported
by MPSS
Length = 472
Score = 26.6 bits (56), Expect = 7.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 399 LGPEASGRIRHSDAELLGSFHDQLPL 322
+ P SGR+ HS L GS D P+
Sbjct: 106 VSPRTSGRLSHSSGPLNGSLTDSPPI 131
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,307,216
Number of Sequences: 28952
Number of extensions: 186711
Number of successful extensions: 623
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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