Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305H08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    26   3.9  
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo...    25   5.2  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    25   6.8  

>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 257 ETTVFNIYRNYLKQKPE 307
           +T V N +R YL+QKPE
Sbjct: 219 KTKVKNYFRTYLRQKPE 235


>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +3

Query: 195 AQTLDASPKFPQ--AAEQNTIVQKQPYLIYIETI*NRNQ 305
           + TL+  PKFPQ  +A +  +V   P+L+      N  Q
Sbjct: 216 SMTLEKDPKFPQPPSAAEVAVVHDGPFLVASNRYLNHGQ 254


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 165 ELIMRLNYINAQTLDASPKFPQAAEQNTIVQKQP 266
           E++   N ++A+   ASP   + +E   IVQ  P
Sbjct: 401 EMLRERNNLSAEGTSASPSLDKKSESTNIVQPIP 434


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,894,490
Number of Sequences: 5004
Number of extensions: 33679
Number of successful extensions: 61
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)