Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305H08f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078788-3|AAC26966.1|  547|Caenorhabditis elegans Hypothetical ...    29   1.5  
Z81533-14|CAB04331.2|  707|Caenorhabditis elegans Hypothetical p...    29   2.7  
AL110478-12|CAM33509.1|  108|Caenorhabditis elegans Hypothetical...    28   3.5  
AL110478-9|CAB54343.2|  113|Caenorhabditis elegans Hypothetical ...    28   3.5  
AC006720-6|AAF60450.1|  346|Caenorhabditis elegans Hypothetical ...    28   3.5  
U56964-6|AAB54035.1|  848|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U50309-2|AAG24136.2|  334|Caenorhabditis elegans Seven tm recept...    27   6.2  

>AF078788-3|AAC26966.1|  547|Caenorhabditis elegans Hypothetical
           protein ZC190.6 protein.
          Length = 547

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -2

Query: 400 YSLS*FKLFILIRATLQCALS*LSSRSYK*NFWFLFQIV-SIYIKYGCFCTI 248
           YSL    LF+     L  +L   + RS+K   WF+F ++ SI I  G   T+
Sbjct: 92  YSLQSLSLFLFSIERLIASLCPTAYRSFKIRIWFIFSLLGSIIISIGFSYTV 143


>Z81533-14|CAB04331.2|  707|Caenorhabditis elegans Hypothetical
           protein F36G9.12 protein.
          Length = 707

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 135 LMTLKCRYKIELIMRLNYINAQTLDASPKFP 227
           +++ KC  K EL++R N+   + LD+  KFP
Sbjct: 64  ILSKKCSKKEELLLRDNFYALEQLDSFGKFP 94


>AL110478-12|CAM33509.1|  108|Caenorhabditis elegans Hypothetical
           protein Y26D4A.17 protein.
          Length = 108

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 449 CFSKTGPVFDKISQFY 496
           CF K   +FDKI+QFY
Sbjct: 38  CFEKVKKIFDKINQFY 53


>AL110478-9|CAB54343.2|  113|Caenorhabditis elegans Hypothetical
           protein Y26D4A.5 protein.
          Length = 113

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 449 CFSKTGPVFDKISQFY 496
           CF K   +FDKI+QFY
Sbjct: 43  CFEKVKKIFDKINQFY 58


>AC006720-6|AAF60450.1|  346|Caenorhabditis elegans Hypothetical
           protein Y17G9B.9 protein.
          Length = 346

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 162 IELIMRLNYINAQTLDASPKFPQAAEQNTIVQKQ--PYLIYIETI*NRNQKFHLYD 323
           +EL+   NY +   +D +PK        TI++ +    L +I+T+   N +   YD
Sbjct: 56  VELVEDENYCSVHRIDETPKLVDKKPSKTIIRDEAVKVLRHIQTVPIENLRLKRYD 111


>U56964-6|AAB54035.1|  848|Caenorhabditis elegans Hypothetical
           protein F52E4.7 protein.
          Length = 848

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/79 (21%), Positives = 37/79 (46%)
 Frame = +3

Query: 162 IELIMRLNYINAQTLDASPKFPQAAEQNTIVQKQPYLIYIETI*NRNQKFHLYDLLLS*L 341
           IE + + N+ N +++       +A  Q    +    ++ ++   +RN +    D+ +  L
Sbjct: 290 IETLKQANFSNPESVQRCTDAARAVAQFWHGRISKPMLQMKAYQDRNDELTAVDVFVDRL 349

Query: 342 RAH*SVARININNLNYDKE 398
            +H S    N+N+L+ D E
Sbjct: 350 MSHLSALFSNLNDLSLDHE 368


>U50309-2|AAG24136.2|  334|Caenorhabditis elegans Seven tm receptor
           protein 146 protein.
          Length = 334

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 307 FWFLFQIVSIYIKYG-CFCTIVFCSA 233
           FW L  +V+  +  G CF  IVFC+A
Sbjct: 194 FWDLMLLVACILTIGGCFAIIVFCAA 219


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,365,651
Number of Sequences: 27780
Number of extensions: 185649
Number of successful extensions: 304
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)