Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305H04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    27   1.3  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   1.7  
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|...    25   5.2  
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     25   6.8  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    25   6.8  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   9.0  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    25   9.0  

>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = +1

Query: 238 SGERLADDVIAVANPSRVRVLRILREGAWPQTYGQSKTIPNFEIFSSFTTWLRLSSAP 411
           S E ++  +  V NP    V R L +    +TY  S   P F  F+     LR+   P
Sbjct: 256 SKESMSQSIAEVLNPYNKGVSRSLNDATNMETYHWSPFPPQFSTFNDNALRLRIYYKP 313


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 285  PRACATHTARRSLAPNLWPIENHSXLRNILVVYNMAQTIFSAWI 416
            P A + H A       LWP+ N S    +  V+N+++++ S ++
Sbjct: 1298 PVALSLHNAEFQ---GLWPLRNSSEKEEVCSVFNISKSVCSKYV 1338


>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 104

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 327 PNLWPIENHSXLRNILVVYNMAQTIFSAWI 416
           PN    +N   L+NI+V+ N    ++ AWI
Sbjct: 21  PNNCSRKNMFFLKNIIVLSNYLYLLYKAWI 50


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 422 VEYPGAEDSLSHVVNDENI 366
           V YPG    LSHV+ DE++
Sbjct: 342 VPYPGMRVGLSHVLLDEDV 360


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 249 SFTRGSPLLSIKSLYQLETVAIFVSYHQLLGDNI 148
           S TR   L S+ +LY+L++  + ++  QLL + I
Sbjct: 750 SSTRKDRLASLNALYELQSSELVIAIPQLLPEAI 783


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +3

Query: 285  PRACATHTARRSLAPNLWPIENHSXLRNILVVYNMAQTIFSAWI 416
            P A + H A       LWP+        +  VYN++Q + + ++
Sbjct: 1296 PCALSLHNAEFQ---GLWPLRTPEEKEEVCAVYNISQRVCTKYV 1336


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 431 QILVEYPGAEDSLSHVVNDENISKXGMV 348
           Q+  E    ED  S + NDE + K GM+
Sbjct: 287 QLEQELYAFEDDYSRIQNDEELLKVGMI 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,182,416
Number of Sequences: 5004
Number of extensions: 42524
Number of successful extensions: 108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)