Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305H04f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0390 - 21720118-21720573,21720667-21721296,21721427-217217... 31 0.42
06_03_0956 + 26296744-26297382,26297595-26297669,26298147-262983... 30 0.98
01_07_0259 - 42353992-42354111,42354255-42354385,42355484-423555... 29 2.3
01_05_0389 + 21716056-21716191,21716275-21716597,21716889-217175... 29 2.3
12_01_0999 - 10128057-10128143,10128346-10128516,10128602-101286... 29 3.0
02_01_0156 - 1086750-1086920,1087680-1087847,1087935-1088171,108... 28 4.0
06_01_0173 - 1364219-1364836,1364941-1365123,1365215-1365470,136... 28 5.2
05_03_0230 - 10687056-10687059,10687108-10687203,10688392-106885... 28 5.2
05_04_0039 + 17421826-17421966,17422105-17422168,17422562-174226... 27 6.9
03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,970... 27 6.9
12_01_0839 + 7833111-7833380,7833925-7834161 27 9.1
>01_05_0390 -
21720118-21720573,21720667-21721296,21721427-21721749,
21721844-21721973
Length = 512
Score = 31.5 bits (68), Expect = 0.42
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +3
Query: 321 LAPN-LWPIENHSXLRNILVVYNMAQTIFSAWIFYEYLMSGWWGHYDF 461
L P+ ++P+E S ++++VV+NMA T F A IF L +G + F
Sbjct: 409 LVPSEIFPLEIRSAAQSVVVVFNMAFTFFIAQIFLMMLCRLKFGLFFF 456
>06_03_0956 +
26296744-26297382,26297595-26297669,26298147-26298341,
26298426-26298559,26298713-26298779,26298985-26299043,
26299204-26299321,26299613-26299726,26299855-26299986,
26300076-26300492,26300904-26300954,26301303-26301373,
26302067-26302151,26302258-26302410,26302522-26302596,
26302755-26302844,26303953-26304000,26304081-26304195,
26305356-26305459,26305582-26305692
Length = 950
Score = 30.3 bits (65), Expect = 0.98
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Frame = +2
Query: 182 KMATVSSWYSDLMDSRGDPRVKD--WPMMSSPWPTLAACVCYAYCAKELGPKLMANRKPF 355
K+A V + D+ DS +P + W P+ LAAC+ + K P+ + P
Sbjct: 589 KVAFVENQLPDIFDSATNPVDGNCWWMNAEDPFQCLAACMDLSDALKSSSPQCAVSHLPI 648
Query: 356 XTSKYSRRLQH----GSDYL 403
LQH G DY+
Sbjct: 649 HQDGSCNGLQHYAALGRDYM 668
>01_07_0259 -
42353992-42354111,42354255-42354385,42355484-42355571,
42356439-42357282,42357354-42357934,42358962-42359159
Length = 653
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 82 QAHLERSGGPFFVCYVSVLFNPYIVTK*LVVTYEDG 189
Q R GG FF CY + L+ Y ++V +DG
Sbjct: 141 QPRRRRQGGGFFSCYFAFLYASYATGDTVLVYVQDG 176
>01_05_0389 +
21716056-21716191,21716275-21716597,21716889-21717518,
21717602-21718054
Length = 513
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 321 LAPN-LWPIENHSXLRNILVVYNMAQTIFSAWIFYEYLMSGWWGHYDF 461
L P+ ++P+E S ++++VV+NMA T A IF L +G + F
Sbjct: 411 LVPSEIFPLEIRSAAQSVVVVFNMAFTFIIAQIFLMMLCHLKFGLFYF 458
>12_01_0999 -
10128057-10128143,10128346-10128516,10128602-10128677,
10128787-10128917,10129007-10129111,10129215-10129391,
10129475-10129623,10129715-10129826,10131819-10132070,
10132323-10132444,10132537-10133371,10133386-10133489,
10133582-10133647,10133766-10133888,10133975-10134151,
10134217-10134387,10134478-10134957,10135357-10135369
Length = 1116
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +1
Query: 295 VLRILREGAWPQTYGQSKTIPNFEIFSSFTTWLRLSSAP 411
+L+IL + + +T+ + T+PN EI ++ T R +AP
Sbjct: 518 ILKILADNPYVETFNRVGTMPNLEINTNVTPDQRRYNAP 556
>02_01_0156 -
1086750-1086920,1087680-1087847,1087935-1088171,
1088763-1089073,1089343-1089571
Length = 371
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 467 HLKVIVAPPSAHQILVEYPGAEDSLSHVVNDENI 366
H+ + PS H ILV+ P L H +NDENI
Sbjct: 159 HIATFNSDPSVHGILVQLP-----LPHHMNDENI 187
>06_01_0173 -
1364219-1364836,1364941-1365123,1365215-1365470,
1365551-1366120,1367066-1367178,1367344-1367816,
1367906-1367984
Length = 763
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 372 LVVYNMAQTIFSAWIFYEYLMSGWWG 449
+++ N+A TIF+ + E L WWG
Sbjct: 448 ILIANIAVTIFACEYYIEQLQLPWWG 473
>05_03_0230 -
10687056-10687059,10687108-10687203,10688392-10688519,
10688688-10688966,10689290-10689375,10689655-10689750,
10689859-10690243
Length = 357
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 441 WWGHYDF*VSTGRLLSESNGHEDGEH 518
WW H T RLL+ S H+ GEH
Sbjct: 208 WWNHGIISDGTYRLLNASCVHDSGEH 233
>05_04_0039 +
17421826-17421966,17422105-17422168,17422562-17422620,
17423410-17423536,17425029-17425116,17425196-17425451,
17425565-17425680,17426232-17426328,17426636-17426771,
17426892-17426979,17427133-17427367
Length = 468
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +1
Query: 223 QQGRSSGERLADDVIAVANPSR--VRVLRILREGAWPQTYGQSKTIPNFEIFSSFTTW 390
+ G S DDV + ++ L+ +R GA + Y + +E+F ++TW
Sbjct: 360 ENGSGSSSETLDDVERINYLAKYIAATLKAIRSGANVKGYSMWSFVDLYELFGGYSTW 417
>03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,
9700145-9700235,9700698-9700759,9701256-9702962,
9703789-9703870,9703972-9704057,9704855-9704968,
9705113-9705163,9705261-9705358,9707084-9707546
Length = 1367
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 267 RRGQP*PRACATHTARRSLAPNLWPIENHSXLRNI 371
R+ QP P +H R SL PNL P++ + RN+
Sbjct: 972 RQKQPQP----SHIVRPSLTPNLGPLDTTTTTRNV 1002
>12_01_0839 + 7833111-7833380,7833925-7834161
Length = 168
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 61 SSCVLNSQAHLERSGGPFFVCY 126
S+ V S HLE GG F+CY
Sbjct: 38 STVVPPSHVHLEECGGALFMCY 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,796,115
Number of Sequences: 37544
Number of extensions: 296744
Number of successful extensions: 688
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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