Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305H04f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7376| Best HMM Match : ELO (HMM E-Value=3.3e-07)                    52   3e-07
SB_7377| Best HMM Match : ELO (HMM E-Value=3.6e-06)                    31   0.58 
SB_52521| Best HMM Match : SAM_2 (HMM E-Value=5.2)                     31   0.76 
SB_6508| Best HMM Match : AMP-binding (HMM E-Value=2.8026e-45)         30   1.0  
SB_35733| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.058)          29   1.8  
SB_33807| Best HMM Match : RNA_pol (HMM E-Value=2.7e-10)               29   3.1  
SB_16437| Best HMM Match : RNA_pol (HMM E-Value=2e-15)                 29   3.1  
SB_41617| Best HMM Match : RVT_1 (HMM E-Value=0)                       27   7.1  
SB_31691| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_53950| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_2411| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  
SB_37776| Best HMM Match : fn3 (HMM E-Value=1.4e-22)                   27   9.4  

>SB_7376| Best HMM Match : ELO (HMM E-Value=3.3e-07)
          Length = 278

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 20/45 (44%), Positives = 31/45 (68%)
 Frame = +2

Query: 215 LMDSRGDPRVKDWPMMSSPWPTLAACVCYAYCAKELGPKLMANRK 349
           ++ S GDPR+ +WP++++PWP L+    Y +  K +GPK M NRK
Sbjct: 13  IVTSVGDPRLHEWPLIATPWPCLSLMAMYLFIVK-VGPKFMENRK 56



 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 360 LRNILVVYNMAQTIFSAWIFYE 425
           LR +LVVYN A  + SA++ YE
Sbjct: 60  LRGVLVVYNFALVLLSAYMVYE 81


>SB_7377| Best HMM Match : ELO (HMM E-Value=3.6e-06)
          Length = 255

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 221 DSRGDPRVKDWPMMSSPWPTLAACVCYAYCAKELGPKLMANRKPF 355
           +S  DPR K+WP ++     +     Y   A   GP LM N+K F
Sbjct: 19  NSISDPRTKNWPFVNDVRVPIGLLFAY-ILAVLTGPHLMKNKKAF 62


>SB_52521| Best HMM Match : SAM_2 (HMM E-Value=5.2)
          Length = 150

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -3

Query: 267 DDIIGQSFTRGSPLLSIKSLYQLETVAIFVSYHQLLGDNIW 145
           +D+ G +FT G   L +K+L  L+     V+Y+ + G+ +W
Sbjct: 38  EDLKGLTFTLGQRKLLMKALTDLQERPPSVNYYHVFGERLW 78


>SB_6508| Best HMM Match : AMP-binding (HMM E-Value=2.8026e-45)
          Length = 1038

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 311 AKELGPKLMANRKPFXTSKYSRRLQHGSDYLQRLDILRVFDE 436
           ++ L P L  + KPF  SK S +L H S   +++D    +DE
Sbjct: 18  SRNLHPHLKTSTKPFNCSKASSQLLHTSAASRKVDKAYTYDE 59


>SB_35733| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.058)
          Length = 448

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 230 PCCPLNHYTNLRRSPSS*VTTNYLVTIYG 144
           P  PL HYT++  +  S  TT YL T++G
Sbjct: 400 PHNPLPHYTDMSHNTVSYHTTQYLATLHG 428


>SB_33807| Best HMM Match : RNA_pol (HMM E-Value=2.7e-10)
          Length = 469

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
 Frame = +2

Query: 209 SDLMDSRGDPRV--KDWPMMSSPWPTLAACVCYAYCAKELGPKLMANRKPFXTSKYSRRL 382
           S+++DS  +P    + W     PW  LA C+  A   +   P    + +P         L
Sbjct: 296 SEVLDSADNPLTGARWWMHGDEPWQVLATCMEIAKAVRSPDPAQYVSHQPVHQDGSCNGL 355

Query: 383 QH 388
           QH
Sbjct: 356 QH 357


>SB_16437| Best HMM Match : RNA_pol (HMM E-Value=2e-15)
          Length = 944

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
 Frame = +2

Query: 209 SDLMDSRGDPRV--KDWPMMSSPWPTLAACVCYAYCAKELGPKLMANRKPFXTSKYSRRL 382
           S+++DS  +P    + W     PW  LA C+  A   +   P    + +P         L
Sbjct: 773 SEVLDSADNPLTGARWWMHGDEPWQVLATCMEIAKAVRSPDPAQYVSHQPVHQDGSCNGL 832

Query: 383 QH 388
           QH
Sbjct: 833 QH 834


>SB_41617| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 675

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = -2

Query: 190 RHLRKLPPITW*QYMG*TELTRNKRRKDRRT--FPNELGYLAHSLNTNKD 47
           RHLR +P I W  Y+   ++ R     D  T    N L +L H    + D
Sbjct: 541 RHLRLIPQIKWDDYISNEDVLRRANVDDIETKLARNRLRWLGHLCRMDDD 590


>SB_31691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
 Frame = +2

Query: 224 SRGDPRVKDWPMMS-SPW---PTLAACVCYAYCAKELGPKLMANRKPFXTSKYSRRLQHG 391
           SR  P+    P +S S W     +AA  C   C  ++GP ++         + +R LQ G
Sbjct: 8   SRTSPQGLRAPTVSFSQWLLISNMAARTCSCSC--KIGPSILNGDLSCLADECNRLLQCG 65

Query: 392 SDYLQRLDIL 421
           +DYL  LD++
Sbjct: 66  ADYL-HLDVM 74


>SB_53950| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 541

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +2

Query: 320 LGPKLMANRKPFXTSKYSRRLQHGSDYLQRLDILRVFDE 436
           L P+L+A+  PF T    +   +G  +  +LD+ + + +
Sbjct: 390 LNPELVADSYPFPTLDDLQEKMNGGSFFSKLDLTKAYSQ 428


>SB_2411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 660

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +1

Query: 244 ERLADDVIAVANPSRVRVLRILREGAWPQTYGQSKTIPNFEIFSSFTTWLRLSSAPGYST 423
           ER+ +D   +A+  ++  LR  R+G  P    +   +     F++  T LRLS+ P Y  
Sbjct: 134 ERMMEDYERLASDRKLDELRNYRKGEKPPKVEEKGQLETN--FNTLQTKLRLSNRPAYLP 191

Query: 424 S 426
           S
Sbjct: 192 S 192


>SB_37776| Best HMM Match : fn3 (HMM E-Value=1.4e-22)
          Length = 1296

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 280  PSRVRVL-RILREGAWPQTYGQSKTIPNFE 366
            P+ V +   ILR G WP+ +G    +P F+
Sbjct: 1226 PTLVNIFDAILRNGQWPKVWGMGVIVPIFK 1255


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,690,984
Number of Sequences: 59808
Number of extensions: 320976
Number of successful extensions: 710
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)