Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305H04f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-37|CAN99761.1| 1156|Caenorhabditis elegans Hypothetical...    29   2.0  
AL132876-36|CAD21670.3| 1138|Caenorhabditis elegans Hypothetical...    29   2.0  
U88314-4|AAK71360.1|  494|Caenorhabditis elegans Let-23 fertilit...    27   6.2  
U88314-3|AAK71361.1|  394|Caenorhabditis elegans Let-23 fertilit...    27   6.2  
U88314-2|AAF99884.2|  461|Caenorhabditis elegans Let-23 fertilit...    27   6.2  
AF045613-1|AAC38962.1|  461|Caenorhabditis elegans inositol tris...    27   6.2  
AF045612-1|AAC38961.1|  394|Caenorhabditis elegans inositol tris...    27   6.2  
AF045611-1|AAC38960.1|  494|Caenorhabditis elegans inositol tris...    27   6.2  

>AL132876-37|CAN99761.1| 1156|Caenorhabditis elegans Hypothetical
           protein Y105E8A.23b protein.
          Length = 1156

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +2

Query: 215 LMDSRGDPR--VKDWPMMSSPWPTLAACV 295
           ++DS  DP    K W     PW TLAACV
Sbjct: 782 MLDSARDPLNGQKWWMSSDEPWQTLAACV 810


>AL132876-36|CAD21670.3| 1138|Caenorhabditis elegans Hypothetical
           protein Y105E8A.23a protein.
          Length = 1138

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +2

Query: 215 LMDSRGDPR--VKDWPMMSSPWPTLAACV 295
           ++DS  DP    K W     PW TLAACV
Sbjct: 782 MLDSARDPLNGQKWWMSSDEPWQTLAACV 810


>U88314-4|AAK71360.1|  494|Caenorhabditis elegans Let-23 fertility
           effector/regulatorprotein 2, isoform a protein.
          Length = 494

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 316 GAWPQTYGQSKTIPNFEIFSSFTTWLRLSSAPGYSTSI 429
           G W   + +S  +PN    +  TTW+  ++  GY   I
Sbjct: 421 GCWMIDFAKSSPVPNGRTLNHRTTWIPGNNEDGYLIGI 458


>U88314-3|AAK71361.1|  394|Caenorhabditis elegans Let-23 fertility
           effector/regulatorprotein 2, isoform b protein.
          Length = 394

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 316 GAWPQTYGQSKTIPNFEIFSSFTTWLRLSSAPGYSTSI 429
           G W   + +S  +PN    +  TTW+  ++  GY   I
Sbjct: 321 GCWMIDFAKSSPVPNGRTLNHRTTWIPGNNEDGYLIGI 358


>U88314-2|AAF99884.2|  461|Caenorhabditis elegans Let-23 fertility
           effector/regulatorprotein 2, isoform c protein.
          Length = 461

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 316 GAWPQTYGQSKTIPNFEIFSSFTTWLRLSSAPGYSTSI 429
           G W   + +S  +PN    +  TTW+  ++  GY   I
Sbjct: 388 GCWMIDFAKSSPVPNGRTLNHRTTWIPGNNEDGYLIGI 425


>AF045613-1|AAC38962.1|  461|Caenorhabditis elegans inositol
           trisphosphate 3-kinaseform 3 protein.
          Length = 461

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 316 GAWPQTYGQSKTIPNFEIFSSFTTWLRLSSAPGYSTSI 429
           G W   + +S  +PN    +  TTW+  ++  GY   I
Sbjct: 388 GCWMIDFAKSSPVPNGRTLNHRTTWIPGNNEDGYLIGI 425


>AF045612-1|AAC38961.1|  394|Caenorhabditis elegans inositol
           trisphosphate 3-kinaseform 2 protein.
          Length = 394

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 316 GAWPQTYGQSKTIPNFEIFSSFTTWLRLSSAPGYSTSI 429
           G W   + +S  +PN    +  TTW+  ++  GY   I
Sbjct: 321 GCWMIDFAKSSPVPNGRTLNHRTTWIPGNNEDGYLIGI 358


>AF045611-1|AAC38960.1|  494|Caenorhabditis elegans inositol
           trisphosphate 3-kinaseform 1 protein.
          Length = 494

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 316 GAWPQTYGQSKTIPNFEIFSSFTTWLRLSSAPGYSTSI 429
           G W   + +S  +PN    +  TTW+  ++  GY   I
Sbjct: 421 GCWMIDFAKSSPVPNGRTLNHRTTWIPGNNEDGYLIGI 458


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,076,384
Number of Sequences: 27780
Number of extensions: 238405
Number of successful extensions: 568
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)