Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305H04f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              26   0.20 
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              25   0.36 
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    23   1.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   1.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.5  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   2.5  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   4.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   5.8  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = +2

Query: 266 SPWPTLAACVCYAYCAKELGPKLMANRKPFXT-SKYSRRLQHGSDYLQRLDILR 424
           SP  T+A CVC   C +   P   +N K +    +  R   H    L +  ++R
Sbjct: 96  SPNSTIAVCVCMRKCPRRHRPVCASNGKIYANHCELHRAACHSGSSLTKSRLMR 149



 Score = 24.2 bits (50), Expect = 0.82
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 345 ENHSXLRNILVVYNMAQTIFSAWIFYEYLMSGWWGHYD 458
           + +  +++ L++YN A+ +       EYL+S  + HYD
Sbjct: 209 QEYEIMKDNLLLYNHARLMSQDNHSKEYLVSIMFSHYD 246


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
 Frame = +2

Query: 107 VLSSFVTCQFCL--THILSPSNWW*LTKMATVSSWYSDLMDSRGDPRVKDWPMMSSPWPT 280
           +LS  +TC  C    H  +  ++     +AT +S  +      G   V    + +  WP 
Sbjct: 6   LLSLLITCLICSPSVHCGTRPSFVSDEMIATAASVVNACQTQTGVATVDIEAVRNGQWPE 65

Query: 281 LAACVCYAYCAKE 319
                CY YC  E
Sbjct: 66  TRQLKCYMYCLWE 78


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -1

Query: 50  RLARLSRIC*CMCKRR 3
           R A  S IC C CKRR
Sbjct: 70  RFAFKSIICKCFCKRR 85


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -1

Query: 50  RLARLSRIC*CMCKRR 3
           R A  S IC C CKRR
Sbjct: 518 RFAFKSIICKCFCKRR 533


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 83  KLIWKGPAVLSSF 121
           K++WK PA+  SF
Sbjct: 132 KVVWKPPAIYKSF 144


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 422 VEYPGAEDSLSHVVNDENISKXGMVF 345
           V+Y G+ED L+     + +SK G++F
Sbjct: 291 VQYQGSEDILNTQSLAKAVSKNGVLF 316


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -1

Query: 443 PSAHQILVEYPGAEDSLSHVVNDENISKXGMVF 345
           P   +  V+Y G++D L+     + +SK G++F
Sbjct: 289 PQYEENNVQYEGSQDILNTQSFGKVVSKNGVLF 321


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 242 VKDWPMMSSPWPTLAACVCYAYCAKEL 322
           + DW  ++S WP L   +   + A EL
Sbjct: 430 LNDWYSLASSWPALVP-LALGFLAGEL 455


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,080
Number of Sequences: 438
Number of extensions: 2831
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)