Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305H04f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g24120.2 68415.m02882 DNA-directed RNA polymerase, chloroplas...    32   0.27 
At2g24120.1 68415.m02881 DNA-directed RNA polymerase, chloroplas...    32   0.27 
At1g58602.1 68414.m06655 disease resistance protein (CC-NBS-LRR ...    28   4.4  

>At2g24120.2 68415.m02882 DNA-directed RNA polymerase, chloroplast
           (RPOPT) identical to SP|O24600 DNA-directed RNA
           polymerase, chloroplast precursor (EC 2.7.7.6)
           {Arabidopsis thaliana}
          Length = 1035

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
 Frame = +2

Query: 182 KMATVSSWYSDLMDSRGDP--RVKDWPMMSSPWPTLAACVCYAYCAKELGPKLMANRKPF 355
           ++A V +   D+MDS  +P    + W     P+  LAACV      K   P  + +  P 
Sbjct: 632 RLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQCLAACVILTQALKSPSPYSVISHLPI 691

Query: 356 XTSKYSRRLQH 388
                   LQH
Sbjct: 692 HQDGSCNGLQH 702


>At2g24120.1 68415.m02881 DNA-directed RNA polymerase, chloroplast
           (RPOPT) identical to SP|O24600 DNA-directed RNA
           polymerase, chloroplast precursor (EC 2.7.7.6)
           {Arabidopsis thaliana}
          Length = 993

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
 Frame = +2

Query: 182 KMATVSSWYSDLMDSRGDP--RVKDWPMMSSPWPTLAACVCYAYCAKELGPKLMANRKPF 355
           ++A V +   D+MDS  +P    + W     P+  LAACV      K   P  + +  P 
Sbjct: 632 RLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQCLAACVILTQALKSPSPYSVISHLPI 691

Query: 356 XTSKYSRRLQH 388
                   LQH
Sbjct: 692 HQDGSCNGLQH 702


>At1g58602.1 68414.m06655 disease resistance protein (CC-NBS-LRR
           class), putative similar to diesease resistance protein
           rpp8 [Arabidopsis thaliana] gi|3901294|gb|AAC78631
          Length = 1138

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -2

Query: 127 RNKRRKDRRTFP--NELGYLAHSLNTNK 50
           RN+ R+ RRTFP  NE G++A   N  K
Sbjct: 144 RNREREIRRTFPKDNESGFVALEENVKK 171


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,508,203
Number of Sequences: 28952
Number of extensions: 227255
Number of successful extensions: 458
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)