Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305H02f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26361| Best HMM Match : fn3 (HMM E-Value=0)                         27   7.1  
SB_46189| Best HMM Match : bZIP_2 (HMM E-Value=3.3)                    27   7.1  

>SB_26361| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1898

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 26/71 (36%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
 Frame = -3

Query: 486  GSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFKIHNTKYNQYLKMS-----TT 322
            GST   S++ IA       +T L S  F       R Y   H T Y  YL +S     T 
Sbjct: 871  GSTLLASDDGIAPNKRTKVYTSLSSDVFY------RFYVYAHTT-YTTYLCLSVNAPCTQ 923

Query: 321  TCNCNSRDRVV 289
             C  NSRDRV+
Sbjct: 924  ACRLNSRDRVL 934


>SB_46189| Best HMM Match : bZIP_2 (HMM E-Value=3.3)
          Length = 445

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 162 VNASGDRKAVGHDGEVAGLPDIYSWF-ITPF*TTKDTV 52
           V   GD   + HDG+ A L ++++   +TP+  + DT+
Sbjct: 404 VKCEGDEPVIMHDGKEATLREVFAMLNLTPYDLSVDTL 441


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,188,257
Number of Sequences: 59808
Number of extensions: 265622
Number of successful extensions: 784
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)