Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305H01f
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q23K36 Cluster: SelT/selW/selH selenoprotein domain con...    36   0.56 
UniRef50_Q8IJI6 Cluster: Putative uncharacterized protein; n=2; ...    33   5.2  
UniRef50_Q8IJF6 Cluster: Putative uncharacterized protein; n=4; ...    33   5.2  
UniRef50_A5DWV2 Cluster: Putative uncharacterized protein; n=1; ...    32   6.9  
UniRef50_UPI00006CFC01 Cluster: hypothetical protein TTHERM_0053...    32   9.2  

>UniRef50_Q23K36 Cluster: SelT/selW/selH selenoprotein domain
           containing protein; n=1; Tetrahymena thermophila
           SB210|Rep: SelT/selW/selH selenoprotein domain
           containing protein - Tetrahymena thermophila SB210
          Length = 410

 Score = 35.9 bits (79), Expect = 0.56
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +3

Query: 333 YH*QQHPPVHNEAYHNQYQLNQHCL*SSTLANDTNTSENKLRDHNHDS 476
           +H  QH    NE +HN+   N+H   S+T  N  +  +N   +HNHD+
Sbjct: 275 HHNNQHHDETNEHHHNE---NKHSAQSNTHQNHEHNDDNNHHNHNHDN 319


>UniRef50_Q8IJI6 Cluster: Putative uncharacterized protein; n=2;
            Plasmodium|Rep: Putative uncharacterized protein -
            Plasmodium falciparum (isolate 3D7)
          Length = 4431

 Score = 32.7 bits (71), Expect = 5.2
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = +3

Query: 333  YH*QQHPPVHNEAYHNQYQLNQHCL*SSTLANDTNTSENKLRDHNHDSRNRTGRKKSCFK 512
            YH + H   HNE YHN+Y    +   +S   N+    E  +++ N  S N +   K   K
Sbjct: 2495 YHNEYHNEYHNE-YHNEYHNENNGNINSIKYNNIIKEEENVKNKNATSNNNSSFSKKNIK 2553

Query: 513  V 515
            +
Sbjct: 2554 L 2554


>UniRef50_Q8IJF6 Cluster: Putative uncharacterized protein; n=4;
           Plasmodium|Rep: Putative uncharacterized protein -
           Plasmodium falciparum (isolate 3D7)
          Length = 1541

 Score = 32.7 bits (71), Expect = 5.2
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +3

Query: 3   FFFFSIYGTVCLLLID*FSVNTVYNKF*VFIERQTFFQFLH-KRGQVKKN 149
           FFFF +Y T+  L+I  F+   +  KF VF      F FL+ +R ++K N
Sbjct: 58  FFFFLLYATLFFLIIILFNKMQIPTKFLVFFNLVILFVFLNFERVELKLN 107


>UniRef50_A5DWV2 Cluster: Putative uncharacterized protein; n=1;
           Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
           uncharacterized protein - Lodderomyces elongisporus
           (Yeast) (Saccharomyces elongisporus)
          Length = 497

 Score = 32.3 bits (70), Expect = 6.9
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = +3

Query: 390 LNQHCL*SSTLANDTNT--SENKLRDHNHDSRNRTGRKKSCFKV 515
           ++ H   + TL++ T +   +NK R+H H +RN  GRK+S  K+
Sbjct: 124 VSNHSSSNHTLSSTTESYQHQNKHRNHQHQNRNHHGRKQSIDKL 167


>UniRef50_UPI00006CFC01 Cluster: hypothetical protein TTHERM_00530000;
            n=1; Tetrahymena thermophila SB210|Rep: hypothetical
            protein TTHERM_00530000 - Tetrahymena thermophila SB210
          Length = 2328

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +3

Query: 357  VHNEAYHNQYQLNQHCL*SSTLANDTNTSENKLRDHNHDSRNRTGRKK 500
            + NE Y     + Q C+ ++    + NT  NK+    + S+N+  R+K
Sbjct: 1170 LQNEEYKQMVSMQQECIKNNNFIQEQNTQSNKILIRYNKSQNQQRREK 1217


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 408,422,295
Number of Sequences: 1657284
Number of extensions: 6843235
Number of successful extensions: 12584
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12542
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)