Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305H01f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.2  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   6.6  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   6.6  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   6.6  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   8.7  
AY531876-1|AAT08870.1|   38|Tribolium castaneum unknown protein.       21   8.7  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 408  TNNVDSIGTGCDMPRCERVD 349
            TNN D +    + P+C +VD
Sbjct: 1934 TNNFDGLDLDWEYPKCWQVD 1953


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = +3

Query: 333 YH*QQHPPVHNEAYHNQYQL 392
           +H Q+  P H++ +H Q  +
Sbjct: 169 HHMQEQHPQHHQPHHQQQHM 188


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 348 HPPVHNEAYHNQY 386
           H P  + A+HNQY
Sbjct: 432 HRPPGDPAFHNQY 444


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = +3

Query: 333 YH*QQHPPVHNEAYHNQYQL 392
           +H Q+  P H++ +H Q  +
Sbjct: 171 HHMQEQHPQHHQPHHQQQHM 190


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 334 TINNNIHPFTTRHITTSTN*INIV 405
           T +NN+   TT+H    TN + I+
Sbjct: 377 TNDNNVSAVTTQHQGYPTNTVTIL 400


>AY531876-1|AAT08870.1|   38|Tribolium castaneum unknown protein.
          Length = 38

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 468 HDSRNRTGRKKSCFK 512
           H+SR RTG  K  F+
Sbjct: 1   HESRQRTGLGKRLFE 15


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,707
Number of Sequences: 336
Number of extensions: 2171
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)