Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305H01f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15911| Best HMM Match : Sec7 (HMM E-Value=0)                        29   1.8  
SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_11736| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_48826| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22)           27   7.1  

>SB_15911| Best HMM Match : Sec7 (HMM E-Value=0)
          Length = 1220

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 336 H*QQHPPVHNEAYHNQYQLNQHCL*SSTLANDTNTSENKLRDHNHDSRNRTG 491
           H + H P H+ A       +QH   +ST  +D  +  + + DH+HD     G
Sbjct: 461 HPEDHSP-HSAASVENSSSSQHLEHNSTTHDDNQSVSSHISDHDHDHEEGKG 511


>SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3511

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 216  YKVTCKSCFERHKYVF 263
            YK TC+  FERHK +F
Sbjct: 3008 YKYTCRGLFERHKLLF 3023


>SB_11736| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 503

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +3

Query: 330 FYH*QQH-PPVHNEAYHNQYQLNQH 401
           +YH QQH PP   + +H+Q Q   H
Sbjct: 470 YYHHQQHRPPQRQQYFHHQQQRKPH 494


>SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 417 TLANDTNTSE-NKLRDHNHDSRNRTGRKKS 503
           T   D N SE + L+ +N DS+++TGRK +
Sbjct: 148 TKHEDFNASEEHSLKTNNDDSKDKTGRKSN 177


>SB_48826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +3

Query: 342 QQHPPVHNEAYHNQYQLNQHCL*SSTLANDTNTSENKLRDHNHDSRNRT 488
           QQ      +    Q Q  QH L +S+  N+ NT+ +   ++N+++ N +
Sbjct: 43  QQQQQQQQQQQQQQQQQQQHNLSNSSDINNNNTTTSNNNNNNNNNNNNS 91


>SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22)
          Length = 1151

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +3

Query: 336 H*QQHPPVHNEAYHNQYQLN---QHCL*SSTLANDTNTSENKLRDHNHDSRNRTGRKK 500
           H QQ P ++N+  H Q Q     Q    ++TL N+ NT +      N ++ N T ++K
Sbjct: 702 HTQQQPNINNKNSHTQQQKQKQPQQSTTTNTLNNNKNTQQITKTLININNNNPTQQQK 759


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,892,261
Number of Sequences: 59808
Number of extensions: 212107
Number of successful extensions: 415
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)