Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305H01f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83236-4|CAB05781.1|  191|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z74036-1|CAA98486.1|  299|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z83104-5|CAC35810.1|  570|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U64857-8|AAM29667.1|  350|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AB012700-1|BAA89795.1|  570|Caenorhabditis elegans FLR-4 protein.      28   4.7  
AY305837-1|AAR11982.1|  376|Caenorhabditis elegans nuclear recep...    27   6.2  
AF016443-4|AAC24282.2|  376|Caenorhabditis elegans Nuclear hormo...    27   6.2  

>Z83236-4|CAB05781.1|  191|Caenorhabditis elegans Hypothetical
           protein K10H10.5 protein.
          Length = 191

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
 Frame = +3

Query: 348 HPPVHNEAYHNQYQLNQHCL--*SSTLANDTNTSENKLRDHNHDSRNRTGRKKSCFKVE 518
           HP  H   YH+ Y  N HCL    S    D      K + H   ++ +  +KK  F  E
Sbjct: 26  HP--HEMYYHHGYGCNGHCLDHQESMCEEDDECGMKKRKKHRKKNKKKKNKKKFRFSDE 82


>Z74036-1|CAA98486.1|  299|Caenorhabditis elegans Hypothetical
           protein F55C10.2 protein.
          Length = 299

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +3

Query: 351 PPVHNEAYHNQYQLNQHCL*SSTLANDTNTSENKLRDHNHDSRNRTGRK 497
           P VHN  +H +  +NQ        A D  T  N+L+   H   NRT R+
Sbjct: 33  PMVHNYVHHVKRTMNQEVQFCRGSAKDIWTEVNELKSIQH--ANRTARQ 79


>Z83104-5|CAC35810.1|  570|Caenorhabditis elegans Hypothetical
           protein F09B12.6 protein.
          Length = 570

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 426 NDTNTSENKLRDHNHDSRNRTGRKKSCFKVET 521
           +++NT  +    HNH +  + GR  +C  +E+
Sbjct: 348 SNSNTDSSTAISHNHSNDRKVGRAGTCLPIES 379


>U64857-8|AAM29667.1|  350|Caenorhabditis elegans Hypothetical
           protein C37C3.8b protein.
          Length = 350

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 107 GLPFYKYLKFIVNSIYRESIN 45
           GLPF +YL FI+ S ++ S+N
Sbjct: 32  GLPFARYLNFILPSEFKMSLN 52


>AB012700-1|BAA89795.1|  570|Caenorhabditis elegans FLR-4 protein.
          Length = 570

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 426 NDTNTSENKLRDHNHDSRNRTGRKKSCFKVET 521
           +++NT  +    HNH +  + GR  +C  +E+
Sbjct: 348 SNSNTDSSTAISHNHSNDRKVGRAGTCLPIES 379


>AY305837-1|AAR11982.1|  376|Caenorhabditis elegans nuclear receptor
           NHR-124 protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 105 TFFQFLHKRGQVKKNRY*CIMNRC 176
           TFFQ LH   + + N Y C++N C
Sbjct: 121 TFFQHLHALNETRYNAY-CVINIC 143


>AF016443-4|AAC24282.2|  376|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 124 protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 105 TFFQFLHKRGQVKKNRY*CIMNRC 176
           TFFQ LH   + + N Y C++N C
Sbjct: 121 TFFQHLHALNETRYNAY-CVINIC 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,036,587
Number of Sequences: 27780
Number of extensions: 181944
Number of successful extensions: 318
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)