Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305H01f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10370.1 68418.m01203 helicase domain-containing protein / IB...    29   2.5  
At4g34290.1 68417.m04874 SWIB complex BAF60b domain-containing p...    29   2.5  

>At5g10370.1 68418.m01203 helicase domain-containing protein / IBR
           domain-containing protein / zinc finger protein-related
           similar to RNA-dependent ATPase/helicase Cdc28p
           [Schizosaccharomyces pombe] GI:1439562; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain, weak hit
           to PF00097: Zinc finger, C3HC4 type (RING finger),
           PF01485: IBR domain
          Length = 1775

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 119 KLKEGLPFYKYLKFIVNSIYRESI 48
           +L++GLP Y Y + I+  I+RE I
Sbjct: 301 RLEDGLPIYAYRRQILKKIHREQI 324


>At4g34290.1 68417.m04874 SWIB complex BAF60b domain-containing
           protein contains Pfam profile PF02201: BAF60b domain of
           the SWIB complex
          Length = 144

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 335 PLTTTSTRSQRGISQPVPIESTL 403
           P TTT TR  RGI +P P+   +
Sbjct: 56  PTTTTKTREPRGIMKPRPVSQAM 78


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,967,043
Number of Sequences: 28952
Number of extensions: 149150
Number of successful extensions: 211
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)