Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305G12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    30   0.24 
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    28   0.73 
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   1.7  
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar...    26   3.0  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    26   3.9  
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||...    25   5.2  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   5.2  

>SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1150

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 20/58 (34%), Positives = 31/58 (53%)
 Frame = +3

Query: 348  GLLRVSGNKQKVSELSQLIERQWYEDRGAVEAAVSLAKGHDLAAVYKRLLRALPQPLL 521
            G+ R +GN +++ ELS +++     D    E    +     LAA+ K+ LR LP PLL
Sbjct: 881  GVFRKNGNIRRLKELSDMLDVS--PDSIDYEQETPI----QLAALLKKFLRELPDPLL 932


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
 Frame = +3

Query: 285 CSAPSVLC------CVTRALRARAHHEGLLRVSGNKQKVSELSQLIERQ---WYEDRGAV 437
           C+ PS+L       CV        H  G+ R+SG+   +  +++        W ++   +
Sbjct: 324 CAPPSLLLPHIFAQCVHFLSLNALHVPGIFRISGSGPVIKAITEYFYSPPHFWLDETSEI 383

Query: 438 EAAVSLAKGHDLAAVYKRLLRALP 509
              +      D+AAV KR +  LP
Sbjct: 384 FKRIGFPSYIDIAAVLKRYIMLLP 407


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 327 RARAHHEGLLRVSGNKQKVSELSQ 398
           R R H E L R++ NK+ + EL+Q
Sbjct: 363 RQRQHEERLKRINANKKALEELNQ 386


>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 36  QMMSHDEDWPEADSNVDIESISEPQLKRLQPLLWLEL 146
           Q  S D D  EA   V ++S S+   KRLQ L   EL
Sbjct: 157 QNQSSDSDSDEAPEEVSLKSSSDEVKKRLQRLKGNEL 193


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 319 RVTQHSTLGALH-VSSHRIMSLRTSVSKDTPNTE 221
           R T  S  G++  +SSHR  S+RTS SK + + E
Sbjct: 134 RPTGRSVRGSMRRLSSHRSKSMRTSKSKKSGDYE 167


>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -3

Query: 222 SPLPSASFWVASSSGRA-ASTCRIS 151
           SP+P   FW+ S   ++ +STC ++
Sbjct: 208 SPIPGHGFWIESFDNKSHSSTCAVA 232


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 33   RQMMSHDEDWPEADSNVDIESISEPQL 113
            R+ +  DE W ++ +N DI+  SE  L
Sbjct: 1121 RRWLESDEGWRKSKANTDIKFFSETTL 1147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,575,813
Number of Sequences: 5004
Number of extensions: 25029
Number of successful extensions: 93
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)