Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305G12f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0139 + 18355597-18355696,18356665-18356778,18357118-183572... 30 0.98
12_01_0869 + 8282399-8282858,8282990-8283066 29 3.0
08_02_1127 + 24496838-24497590 28 4.0
08_02_0770 - 21018701-21019216,21019246-21019364,21020516-21020675 28 4.0
04_04_1126 + 31095651-31096115 28 4.0
04_04_1093 + 30825722-30826168,30826457-30826608,30826926-308270... 28 4.0
08_02_1040 - 23873354-23874509,23875645-23875796 28 5.2
08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,452... 28 5.2
03_02_0173 + 6138406-6138628,6139769-6139857,6139922-6140608,614... 28 5.2
01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871 25 6.7
11_03_0215 + 11809068-11809300,11809872-11809964,11810976-118111... 27 6.9
10_08_0877 + 21230447-21230815,21231855-21232208,21232417-212325... 27 6.9
05_01_0356 + 2785410-2785670,2785843-2785960,2786800-2786891,278... 27 6.9
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 27 6.9
02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,290... 27 6.9
07_03_1675 - 28576945-28576966,28577286-28577440 27 9.1
04_04_0910 - 29321128-29321276,29321977-29322508,29323301-293237... 27 9.1
04_01_0231 - 2929408-2929728 27 9.1
01_01_0706 + 5442163-5442482,5443125-5443236,5444523-5444852 27 9.1
>05_04_0139 +
18355597-18355696,18356665-18356778,18357118-18357263,
18357365-18357910,18358397-18358600
Length = 369
Score = 30.3 bits (65), Expect = 0.98
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +3
Query: 339 HHEGLLRVSGNKQKVSELSQLIERQWYEDRGAVEAAVSLAKGHDLAAVYKRLLRALPQP 515
H + ++R+ G + K ++L+ +ER E ++ + +G LAAV K L L P
Sbjct: 239 HGDDVVRIVGTRSK-AQLAVTLERYRQEHGKGIDEVLDGRRGDQLAAVLKAALWCLTSP 296
>12_01_0869 + 8282399-8282858,8282990-8283066
Length = 178
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -3
Query: 279 PPTGSCPCGPASLRTRRTRSPLPSASFWVASSSGR 175
PPT S G +L +RR+ SP P+ S A++S R
Sbjct: 18 PPTTSPTSGSTALVSRRSPSPSPAPSAASATASSR 52
>08_02_1127 + 24496838-24497590
Length = 250
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +1
Query: 409 GSGTRTAARWRRPSRSLRDTTS 474
G G R RW RPSRS R +S
Sbjct: 147 GGGCRRPCRWSRPSRSRRPCSS 168
>08_02_0770 - 21018701-21019216,21019246-21019364,21020516-21020675
Length = 264
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 367 PETLSSPSWCARARSARVTQHSTLGA 290
P +SSPS C + S+R+ H LGA
Sbjct: 189 PVVISSPSRCTSSPSSRLLNHEHLGA 214
>04_04_1126 + 31095651-31096115
Length = 154
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -3
Query: 105 ARLCSLCPRYCPPPANPRRDSSSVCP 28
A CS CP PPP P S CP
Sbjct: 30 AAACSYCPTPKPPPPPPPAPSGVPCP 55
>04_04_1093 +
30825722-30826168,30826457-30826608,30826926-30827048,
30827240-30827384,30828032-30828093,30828373-30828586,
30829671-30830585,30830827-30831076,30831164-30831432
Length = 858
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 279 PPTGSCPCGPASLRTRRTRSPLPSASFWVASSSGRAAS 166
PP P + R+RR SP PS + +SS+ +AS
Sbjct: 18 PPLRHSPAALGTPRSRRRHSPSPSLALTPSSSASASAS 55
>08_02_1040 - 23873354-23874509,23875645-23875796
Length = 435
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 424 TAARWRRPSRSLRDTTSPPSTSGCCGRCPSP 516
TA RW R S +LR +S + + PSP
Sbjct: 320 TALRWVRSSTALRGNSSDAAAAAAAAAAPSP 350
>08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,
4521632-4521723,4522226-4522342,4522641-4522704,
4523175-4523228,4523579-4523666,4523788-4524023,
4525258-4525478,4525634-4525827,4525938-4525995,
4526771-4526824,4526851-4527473,4527580-4527640,
4528417-4528590,4528803-4529063,4529201-4529320,
4529388-4530022,4530062-4530828,4530915-4531012,
4531101-4531155,4531230-4531318
Length = 2010
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 255 RKDMILWEETCSAPSVLCCVTRALRARA 338
+++M LW ET A V CC + A+RA A
Sbjct: 1196 KREMELWMETAEAREVECCAS-AVRAAA 1222
>03_02_0173 +
6138406-6138628,6139769-6139857,6139922-6140608,
6140682-6140834,6140922-6141290
Length = 506
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +1
Query: 409 GSGTRTAARWRRPSRSLRDTTSPPSTSGCCGR 504
G G R A W++ R D PP SG R
Sbjct: 25 GLGRRRRAEWQQRKRGAHDPAPPPPGSGAAQR 56
>01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871
Length = 177
Score = 24.6 bits (51), Expect(2) = 6.7
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -3
Query: 87 CPRYCPPPANPR 52
CP CPPP PR
Sbjct: 146 CPLPCPPPCPPR 157
Score = 21.4 bits (43), Expect(2) = 6.7
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = -3
Query: 90 LCPRYCPPP 64
+CP CPPP
Sbjct: 129 ICPPPCPPP 137
>11_03_0215 +
11809068-11809300,11809872-11809964,11810976-11811193,
11812780-11812832,11813411-11813527,11814817-11814908,
11815672-11815758,11816625-11816742
Length = 336
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +3
Query: 378 KVSELSQLIERQWYEDRGAVEAAVSLAKGHDLAAVYKRLLRALPQPL 518
K ++LSQ++ R+ Y RGA+ AV+ + +V +R+ + L PL
Sbjct: 44 KSTQLSQILHRRGYTRRGAI--AVTQPRRVAAVSVSRRVAQELSVPL 88
>10_08_0877 +
21230447-21230815,21231855-21232208,21232417-21232504,
21232844-21233268,21233477-21233632,21233849-21234016,
21234170-21234310,21234393-21234629,21234710-21234823,
21235096-21235272
Length = 742
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +3
Query: 327 RARAHHEGLLRVSGNKQKVSELSQLIERQWYEDRG--AVEAAVSLAKGHDLA 476
R HH G + +SGN+Q +L+ + Q + DR V+ V+ A G +A
Sbjct: 532 RVYCHHHGTMNISGNRQYSCKLT--FKEQSFLDRNPRQVQGLVTDANGTKVA 581
>05_01_0356 + 2785410-2785670,2785843-2785960,2786800-2786891,
2787114-2787176,2787299-2787397,2787726-2787884,
2788420-2788491,2788567-2788699,2788813-2788877,
2789016-2789091,2789236-2789337,2789524-2789716,
2790576-2790654,2792939-2793007,2793261-2793311,
2793680-2793742,2793926-2794041,2794263-2794347,
2794898-2794957,2795594-2795639,2796011-2796084,
2796350-2796400,2796474-2796674,2796747-2796791,
2797063-2797156,2797226-2797371,2797510-2797739,
2798136-2798196,2798290-2798347,2799020-2799513
Length = 1151
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 412 SGTRTAARWRRPSRSLRDTTSPP-STSGCCGRCPSP 516
SGTR A W +RS+ T+ PP +T G P P
Sbjct: 999 SGTRPPATWSDMTRSVEPTSLPPMNTVGTTTPRPRP 1034
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 27.5 bits (58), Expect = 6.9
Identities = 29/93 (31%), Positives = 33/93 (35%), Gaps = 1/93 (1%)
Frame = -3
Query: 282 SPPTGSCPCGPASLR-TRRTRSPLPSASFWVASSSGRAASTCRISXXXXXXXXXXXXXVE 106
SP + S P L T T SPLP A ASSS A+ +
Sbjct: 11 SPSSSSSPSVALGLAATTPTTSPLPLAPAAAASSSNPNATPADTTPTSPPPASPPLPSAT 70
Query: 105 ARLCSLCPRYCPPPANPRRDSSSVCPS*ICAQS 7
L + P PPP PR S P AQS
Sbjct: 71 PPLAA-SPPPPPPPPPPRNSPSPPKPPSQAAQS 102
>02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,
2907650-2907790,2907870-2908043,2908577-2908851,
2909592-2909755,2910409-2910536,2910628-2910734,
2911747-2911880,2912266-2912441,2912530-2914257,
2915084-2915239,2915328-2915486,2915581-2915751,
2915931-2916047,2916417-2916473,2916565-2916680,
2916790-2916916,2917862-2917945
Length = 2056
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 454 SLRDTTSPPSTSGCCGRCPSP 516
+L+DT +PP+ G G+ PSP
Sbjct: 2034 TLQDTPAPPADDGLLGKGPSP 2054
>07_03_1675 - 28576945-28576966,28577286-28577440
Length = 58
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 291 APSVLCCV-TRALRARAHHEGLLRVSGNKQKVSELSQLIERQWY 419
AP +LCC+ TR+ AR H + +S + + + + + +R W+
Sbjct: 8 APVLLCCLATRSCTAR--HGAVRELSSDPRGAAVMQTMTDRTWF 49
>04_04_0910 -
29321128-29321276,29321977-29322508,29323301-29323706,
29323933-29324028,29324563-29324645,29326620-29326732,
29327156-29327315
Length = 512
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Frame = -3
Query: 270 GSCPCGPASLRTRRTRSPLPSASFWV--ASSSGRAASTCRIS 151
G P G A+ RRT P P W A GR + R+S
Sbjct: 283 GDVPGGDAACPGRRTVDPTPCGRIWPPHARRDGRGSEAARMS 324
>04_01_0231 - 2929408-2929728
Length = 106
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 118 ACSRYCGWSSRRYSTSTRC-PSRRGSHPKRSGRKRAPC 228
A S + W + + ++ PS+RG + R+RAPC
Sbjct: 57 AASDFIFWGAEHKAAPSQAFPSQRGGDGGENSRRRAPC 94
>01_01_0706 + 5442163-5442482,5443125-5443236,5444523-5444852
Length = 253
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -3
Query: 276 PTGSCPCGPASLRTRRTRSPLPSASF--WVASSSGRAAS 166
P S P+S TR +PLPS S + + SGR AS
Sbjct: 194 PFPSQHVAPSSFTTRNALAPLPSNSMPNGIGNGSGRGAS 232
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,058,415
Number of Sequences: 37544
Number of extensions: 224142
Number of successful extensions: 1078
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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