Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305G12f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40773| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 8e-06
SB_45475| Best HMM Match : RhoGAP (HMM E-Value=1.26117e-44) 46 3e-05
SB_31002| Best HMM Match : RhoGAP (HMM E-Value=0) 43 1e-04
SB_42550| Best HMM Match : RhoGAP (HMM E-Value=0) 34 0.062
SB_42552| Best HMM Match : RhoGAP (HMM E-Value=0) 34 0.082
SB_43333| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.11
SB_49128| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.14
SB_38980| Best HMM Match : RhoGAP (HMM E-Value=0) 33 0.19
SB_4894| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_46203| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_7556| Best HMM Match : HEAT (HMM E-Value=1.5e-09) 29 3.1
SB_45927| Best HMM Match : WD40 (HMM E-Value=9e-18) 29 3.1
SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0) 28 4.1
SB_5803| Best HMM Match : S-antigen (HMM E-Value=7.5) 28 4.1
SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036) 28 5.4
SB_7782| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_18579| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_36662| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_23038| Best HMM Match : EGF_2 (HMM E-Value=2.8e-11) 27 9.4
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_23891| Best HMM Match : P60 (HMM E-Value=2.2) 27 9.4
SB_10519| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_40773| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 47.2 bits (107), Expect = 8e-06
Identities = 27/65 (41%), Positives = 37/65 (56%)
Frame = +3
Query: 327 RARAHHEGLLRVSGNKQKVSELSQLIERQWYEDRGAVEAAVSLAKGHDLAAVYKRLLRAL 506
R R EGL R+SGNK++ EL +LI+R G + HD+A+V K+ L L
Sbjct: 69 RKRVDKEGLFRISGNKKRQEELKELIDRGDTPKLGCGKFT-----AHDVASVLKQFLGEL 123
Query: 507 PQPLL 521
P+PLL
Sbjct: 124 PEPLL 128
>SB_45475| Best HMM Match : RhoGAP (HMM E-Value=1.26117e-44)
Length = 552
Score = 45.6 bits (103), Expect = 3e-05
Identities = 33/101 (32%), Positives = 49/101 (48%)
Frame = +3
Query: 219 GSVFGVSLETLVRKDMILWEETCSAPSVLCCVTRALRARAHHEGLLRVSGNKQKVSELSQ 398
G+VFG L+ V + + CS P L + LR + EGL R SG+ Q+ L +
Sbjct: 170 GAVFGALLDN-VPSENVGENYYCSVPKFLVDSAKFLRQHMNTEGLFRKSGSVQRQKLLKE 228
Query: 399 LIERQWYEDRGAVEAAVSLAKGHDLAAVYKRLLRALPQPLL 521
IE + +S A+ HD+A + K+ R L +PLL
Sbjct: 229 RIE---------LGEEISTAQPHDVAGLMKQFFRQLQEPLL 260
>SB_31002| Best HMM Match : RhoGAP (HMM E-Value=0)
Length = 1250
Score = 43.2 bits (97), Expect = 1e-04
Identities = 29/79 (36%), Positives = 37/79 (46%)
Frame = +3
Query: 285 CSAPSVLCCVTRALRARAHHEGLLRVSGNKQKVSELSQLIERQWYEDRGAVEAAVSLAKG 464
C V C+ H +G+ RVSG K +V +L Q E GA +S
Sbjct: 261 CVPYIVSSCIKEINNRGLHVKGIYRVSGVKSRVEKLCQAFEN------GAELVDLSTVPP 314
Query: 465 HDLAAVYKRLLRALPQPLL 521
H +AAV K LR LP+PLL
Sbjct: 315 HVIAAVLKLYLRQLPEPLL 333
>SB_42550| Best HMM Match : RhoGAP (HMM E-Value=0)
Length = 790
Score = 34.3 bits (75), Expect = 0.062
Identities = 26/99 (26%), Positives = 45/99 (45%)
Frame = +3
Query: 225 VFGVSLETLVRKDMILWEETCSAPSVLCCVTRALRARAHHEGLLRVSGNKQKVSELSQLI 404
VFGV + ++++ + P +LC + R G+ R SG KQ+++ L ++
Sbjct: 300 VFGVPMSVVLQRS----GQPLPRP-ILCAINYLQRTCVESVGIFRKSGGKQRINNLKDMM 354
Query: 405 ERQWYEDRGAVEAAVSLAKGHDLAAVYKRLLRALPQPLL 521
E + E +DLA + K+ R LP P+L
Sbjct: 355 EDN--PEHTDFEG----MSPYDLADMLKQYFRDLPDPIL 387
>SB_42552| Best HMM Match : RhoGAP (HMM E-Value=0)
Length = 945
Score = 33.9 bits (74), Expect = 0.082
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +3
Query: 339 HHEGLLRVSGNKQKVSELSQLIERQWYEDRGAVEAAVSLAKGHDLAAVYKRLLRALPQPL 518
H G+ R G+K+++ ++ + D G + HD+AA++K LR LP+PL
Sbjct: 423 HVLGIFRTGGSKKRMKQMREQF------DSGEKTQFNAEDNPHDVAALFKEYLRDLPEPL 476
Query: 519 L 521
L
Sbjct: 477 L 477
>SB_43333| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 33.5 bits (73), Expect = 0.11
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = +3
Query: 345 EGLLRVSGNKQKVSELSQLIERQWYEDRGAVEAAVSLAKGHDLAAVYKRLLRALPQPLL 521
EG+ R S N Q V +++ + ++G L H AA+ K+ LR LP+PLL
Sbjct: 290 EGIFRRSANSQMVKQVTVMF------NQGTPVDYTELGDVHCAAAIIKKFLRELPEPLL 342
>SB_49128| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 464
Score = 33.1 bits (72), Expect = 0.14
Identities = 24/75 (32%), Positives = 32/75 (42%)
Frame = -2
Query: 445 AASTAPRSSYHCRSIS*LSSDTFCLFPETLSSPSWCARARSARVTQHSTLGALHVSSHRI 266
AAS APR+ Y CR S D+ P+ + WC +S + HS R
Sbjct: 195 AASPAPRTCYGCRQTSHFIRDS----PKKSETTKWCNYHKS---STHSDGECKRQQQKRD 247
Query: 265 MSLRTSVSKDTPNTE 221
+ + SV DT N E
Sbjct: 248 TTKKVSVMNDTENNE 262
>SB_38980| Best HMM Match : RhoGAP (HMM E-Value=0)
Length = 367
Score = 32.7 bits (71), Expect = 0.19
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Frame = +3
Query: 228 FGVSLETLVRKDMILWEETCSAPSVLCCVTRAL-RARAHHEGLLRVSGNKQKVSELSQLI 404
FGV LE + + + P VL + L + HEG+ RVSGN + V L
Sbjct: 176 FGVPLEEVTKS-----RDGSPIPWVLAKIVHYLSQCGLKHEGIFRVSGNHKVVESLKATF 230
Query: 405 ERQWYEDRGAVEAAVSLAKGHDLAAVYKRLLRALPQP 515
+R D +E +A +A + K LR LP+P
Sbjct: 231 DRDGDAD---LEECDVMA----VAGLLKLFLRELPEP 260
>SB_4894| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 486
Score = 31.1 bits (67), Expect = 0.58
Identities = 21/59 (35%), Positives = 31/59 (52%)
Frame = +3
Query: 345 EGLLRVSGNKQKVSELSQLIERQWYEDRGAVEAAVSLAKGHDLAAVYKRLLRALPQPLL 521
EG+ RVSG K KV L +L ++ D E V +A++ K+ LR LP+ +L
Sbjct: 137 EGIYRVSGVKSKVDALKELYDQGKQVDLKEYEPEV-------VASIVKQYLRELPESVL 188
>SB_46203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +1
Query: 424 TAARWRRPSRSLRDTTSPPSTSGCCGR--CPSP 516
T AR+ PS++ TTS P+T+G C C SP
Sbjct: 320 TEARFTPPSQNKARTTSGPTTAGPCSNVTCDSP 352
>SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 856
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 424 TAARWRRPSRSLRDTTSPPSTSGCC 498
T +R R S S+R+T+SP S CC
Sbjct: 647 TPSRQLRRSSSIRETSSPSRLSSCC 671
>SB_7556| Best HMM Match : HEAT (HMM E-Value=1.5e-09)
Length = 331
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 309 CVTRALRARAHHEGL 353
CVTRA RAR H+EG+
Sbjct: 296 CVTRAERARCHYEGI 310
>SB_45927| Best HMM Match : WD40 (HMM E-Value=9e-18)
Length = 1764
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 84 DIESISEPQLKRLQPLLWLELTAIFDKY 167
D+ P ++RL PLLW+ + A D Y
Sbjct: 778 DVFQYWTPPIRRLPPLLWVRIRADLDSY 805
>SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)
Length = 1277
Score = 28.3 bits (60), Expect = 4.1
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +3
Query: 309 CVTRALRARAHHEGLLRVSGNKQKVSELSQLIERQWYEDRGAVEAAVSLAKG-HDLAAVY 485
CV + GL R+SGN ++ EL + E+ AV+ + + + +
Sbjct: 951 CVLEIEKRGLESVGLYRISGNARRKKELRGFFD----ENSEAVDISEENCPDINVITGIL 1006
Query: 486 KRLLRALPQPLL 521
K LR LP+PL+
Sbjct: 1007 KDYLRELPEPLI 1018
>SB_5803| Best HMM Match : S-antigen (HMM E-Value=7.5)
Length = 218
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = -3
Query: 282 SPPTGSCPCGPASLRTRRTRSPLPSASFWVASSSGRAAST 163
SPP S P PA ++R R PLP V+ S+ R AS+
Sbjct: 82 SPPMVSAPTKPAPSASKRGRPPLP-----VSKSNKRTASS 116
>SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036)
Length = 1336
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = +3
Query: 384 SELSQLIERQ-WYEDRGAVEAAVSLAKGHDLA--AVYKRLLRALPQP 515
S+ + +ER+ W+E+R + E+ V+++ D + RLL LP+P
Sbjct: 45 SKAKKSVERRDWFEERASSESGVTMSSDDDDSGGGWLGRLLELLPEP 91
>SB_7782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +3
Query: 345 EGLLRVSGNKQKVSELSQLIERQWYEDRGAVEAAVSLAKGHDLAAVYKRLLRALPQPLL 521
EG+ R SG + + + + + D A+E V H + K+ L+ LP+PL+
Sbjct: 290 EGIYRKSGKIEDIRTIQNSFDEKRDADFSALEMNV-----HAVTGALKKFLKLLPEPLI 343
>SB_18579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +1
Query: 115 SACSRYCGWSSRRYSTS--TRCPSRRGSHPKRSGRKRAPCS 231
SACS CG + +++T TR P+ GS P + RK PC+
Sbjct: 47 SACSAPCGSTGTQFTTRTVTRQPACGGS-PCPTLRKAQPCN 86
>SB_36662| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 440
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = +3
Query: 54 EDWPEADSNVDIESISEPQLKRLQPLLWLELTAIFDKYSL 173
E+W + D N+ +E + + +LK QPL+ L++++D + +
Sbjct: 33 EEWIDPD-NMVLEPLVQKRLKTSQPLVRALLSSVYDLHPI 71
>SB_23038| Best HMM Match : EGF_2 (HMM E-Value=2.8e-11)
Length = 1477
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -2
Query: 328 RSARVTQHSTLGALHVSSHRIMSLRTSVSKDTPN 227
RS RV+ ++G H+S ++S+ + DTP+
Sbjct: 1205 RSFRVSASGSIGNEHISRSTMLSITANARADTPS 1238
>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 565
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 418 TRTAARWRRPSRSLRDTTSPPSTSGCCG 501
T+T A W PS++ + P T CG
Sbjct: 80 TKTHANWNHPSKTRANWNHPSKTQANCG 107
>SB_23891| Best HMM Match : P60 (HMM E-Value=2.2)
Length = 1167
Score = 27.1 bits (57), Expect = 9.4
Identities = 8/31 (25%), Positives = 17/31 (54%)
Frame = +3
Query: 42 MSHDEDWPEADSNVDIESISEPQLKRLQPLL 134
+ D+DWP++D D ++ P L + ++
Sbjct: 392 IEEDDDWPKSDEEEDYDAPENPDLSDIDEVM 422
>SB_10519| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 873
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 309 CVTRALRARAHHEGLLRVSGNKQKVSELSQLIE 407
CV R H G+ R+SG+ ++++ QL E
Sbjct: 472 CVRFIKRFGLDHPGIFRLSGSSTDINDMKQLFE 504
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,076,936
Number of Sequences: 59808
Number of extensions: 234619
Number of successful extensions: 893
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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