Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305G12f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z34800-3|CAA84322.2| 722|Caenorhabditis elegans Hypothetical pr... 37 0.008
Z34800-2|CAA84324.2| 842|Caenorhabditis elegans Hypothetical pr... 37 0.008
Z46812-6|CAA86848.2| 546|Caenorhabditis elegans Hypothetical pr... 36 0.013
Z46812-5|CAA86847.2| 775|Caenorhabditis elegans Hypothetical pr... 36 0.013
Z37093-8|CAA85469.2| 546|Caenorhabditis elegans Hypothetical pr... 36 0.013
Z37093-7|CAA85468.2| 775|Caenorhabditis elegans Hypothetical pr... 36 0.013
U97192-2|AAO38678.1| 622|Caenorhabditis elegans Hypothetical pr... 34 0.071
U97192-1|AAB52434.2| 986|Caenorhabditis elegans Hypothetical pr... 34 0.071
U28741-7|AAO38645.1| 721|Caenorhabditis elegans Synapse defecti... 33 0.094
U28741-6|AAO21428.1| 942|Caenorhabditis elegans Synapse defecti... 33 0.094
U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defecti... 33 0.094
AF546880-1|AAN38752.1| 942|Caenorhabditis elegans axon identity... 33 0.094
U80955-10|AAN65297.2| 475|Caenorhabditis elegans Hypothetical p... 31 0.50
U80955-9|AAN65296.1| 863|Caenorhabditis elegans Hypothetical pr... 31 0.50
U80955-8|AAN65295.1| 881|Caenorhabditis elegans Hypothetical pr... 31 0.50
Z81130-4|CAB03414.2| 512|Caenorhabditis elegans Hypothetical pr... 31 0.66
Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical pr... 27 6.2
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati... 27 6.2
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr... 27 6.2
AF045646-3|AAK29836.2| 432|Caenorhabditis elegans Hypothetical ... 27 6.2
AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein. 27 6.2
>Z34800-3|CAA84322.2| 722|Caenorhabditis elegans Hypothetical
protein F45H7.2b protein.
Length = 722
Score = 37.1 bits (82), Expect = 0.008
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Frame = +3
Query: 219 GSVFGVSLETLVRKDMILWEETCSAPSVLCCVTRALRARAHHE-GLLRVSGNKQKVSELS 395
G+VFGV L+ + + P + V + LR A G+ R +G K +++EL
Sbjct: 265 GAVFGVGLDVIFNRTGYF------LPRPILEVMKFLRNIAPETVGIFRKNGVKSRIAELR 318
Query: 396 QLIER-QWYEDRGAVEAAVSLAKGHDLAAVYKRLLRALPQPLL 521
+IE D E + + HD+A + K+ R LP+PL+
Sbjct: 319 SIIESYSGNTDVFVGENLLDSTQVHDVADLLKQYFRDLPEPLM 361
>Z34800-2|CAA84324.2| 842|Caenorhabditis elegans Hypothetical
protein F45H7.2a protein.
Length = 842
Score = 37.1 bits (82), Expect = 0.008
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Frame = +3
Query: 219 GSVFGVSLETLVRKDMILWEETCSAPSVLCCVTRALRARAHHE-GLLRVSGNKQKVSELS 395
G+VFGV L+ + + P + V + LR A G+ R +G K +++EL
Sbjct: 385 GAVFGVGLDVIFNRTGYF------LPRPILEVMKFLRNIAPETVGIFRKNGVKSRIAELR 438
Query: 396 QLIER-QWYEDRGAVEAAVSLAKGHDLAAVYKRLLRALPQPLL 521
+IE D E + + HD+A + K+ R LP+PL+
Sbjct: 439 SIIESYSGNTDVFVGENLLDSTQVHDVADLLKQYFRDLPEPLM 481
>Z46812-6|CAA86848.2| 546|Caenorhabditis elegans Hypothetical
protein ZK669.1b protein.
Length = 546
Score = 36.3 bits (80), Expect = 0.013
Identities = 25/68 (36%), Positives = 34/68 (50%)
Frame = +3
Query: 318 RALRARAHHEGLLRVSGNKQKVSELSQLIERQWYEDRGAVEAAVSLAKGHDLAAVYKRLL 497
R LRA+ G+ R G K K+ E+ ER +D E + +LA+V K L
Sbjct: 206 RGLRAK----GIYRTCGVKSKIEEICNAFERSSSDD----EVCLDNENPMNLASVVKLYL 257
Query: 498 RALPQPLL 521
R LP+PLL
Sbjct: 258 RKLPEPLL 265
>Z46812-5|CAA86847.2| 775|Caenorhabditis elegans Hypothetical
protein ZK669.1a protein.
Length = 775
Score = 36.3 bits (80), Expect = 0.013
Identities = 25/68 (36%), Positives = 34/68 (50%)
Frame = +3
Query: 318 RALRARAHHEGLLRVSGNKQKVSELSQLIERQWYEDRGAVEAAVSLAKGHDLAAVYKRLL 497
R LRA+ G+ R G K K+ E+ ER +D E + +LA+V K L
Sbjct: 435 RGLRAK----GIYRTCGVKSKIEEICNAFERSSSDD----EVCLDNENPMNLASVVKLYL 486
Query: 498 RALPQPLL 521
R LP+PLL
Sbjct: 487 RKLPEPLL 494
>Z37093-8|CAA85469.2| 546|Caenorhabditis elegans Hypothetical
protein ZK669.1b protein.
Length = 546
Score = 36.3 bits (80), Expect = 0.013
Identities = 25/68 (36%), Positives = 34/68 (50%)
Frame = +3
Query: 318 RALRARAHHEGLLRVSGNKQKVSELSQLIERQWYEDRGAVEAAVSLAKGHDLAAVYKRLL 497
R LRA+ G+ R G K K+ E+ ER +D E + +LA+V K L
Sbjct: 206 RGLRAK----GIYRTCGVKSKIEEICNAFERSSSDD----EVCLDNENPMNLASVVKLYL 257
Query: 498 RALPQPLL 521
R LP+PLL
Sbjct: 258 RKLPEPLL 265
>Z37093-7|CAA85468.2| 775|Caenorhabditis elegans Hypothetical
protein ZK669.1a protein.
Length = 775
Score = 36.3 bits (80), Expect = 0.013
Identities = 25/68 (36%), Positives = 34/68 (50%)
Frame = +3
Query: 318 RALRARAHHEGLLRVSGNKQKVSELSQLIERQWYEDRGAVEAAVSLAKGHDLAAVYKRLL 497
R LRA+ G+ R G K K+ E+ ER +D E + +LA+V K L
Sbjct: 435 RGLRAK----GIYRTCGVKSKIEEICNAFERSSSDD----EVCLDNENPMNLASVVKLYL 486
Query: 498 RALPQPLL 521
R LP+PLL
Sbjct: 487 RKLPEPLL 494
>U97192-2|AAO38678.1| 622|Caenorhabditis elegans Hypothetical
protein C01F4.2b protein.
Length = 622
Score = 33.9 bits (74), Expect = 0.071
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 348 GLLRVSGNKQKVSELSQLIERQWYEDRGAV--EAAVSLAKGHDLAAVYKRLLRALPQPLL 521
GL RV+GN ++ +L +E+ GAV + V HD+A + K R LPQ LL
Sbjct: 548 GLFRVAGNTKRCRQLRNALEKV---GGGAVINDNMVENTTSHDVATLLKEYFRDLPQSLL 604
>U97192-1|AAB52434.2| 986|Caenorhabditis elegans Hypothetical
protein C01F4.2a protein.
Length = 986
Score = 33.9 bits (74), Expect = 0.071
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 348 GLLRVSGNKQKVSELSQLIERQWYEDRGAV--EAAVSLAKGHDLAAVYKRLLRALPQPLL 521
GL RV+GN ++ +L +E+ GAV + V HD+A + K R LPQ LL
Sbjct: 548 GLFRVAGNTKRCRQLRNALEKV---GGGAVINDNMVENTTSHDVATLLKEYFRDLPQSLL 604
>U28741-7|AAO38645.1| 721|Caenorhabditis elegans Synapse defective
protein 1, isoformc protein.
Length = 721
Score = 33.5 bits (73), Expect = 0.094
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Frame = +3
Query: 225 VFGVSLETLVRKDMILWEETCSAPSVLCCVTRALRARA-HHEGLLRVSGNKQKVSELSQL 401
VFG+SL LV++ E P VL + + + R + GL + G+ +K L
Sbjct: 486 VFGISLSRLVQR------ERRDTPIVLTRLIQEIEKRGVDYSGLYVLCGSVEKKKMLRAE 539
Query: 402 IERQWYEDRGAVEAAVSLAKGHDLAAVYKRLLRALPQPLL 521
+E G AA S+ + +A + K LR LP+PL+
Sbjct: 540 LESN---PLGTELAAESIPDTNVIACLIKDFLRELPEPLI 576
>U28741-6|AAO21428.1| 942|Caenorhabditis elegans Synapse defective
protein 1, isoformb protein.
Length = 942
Score = 33.5 bits (73), Expect = 0.094
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Frame = +3
Query: 225 VFGVSLETLVRKDMILWEETCSAPSVLCCVTRALRARA-HHEGLLRVSGNKQKVSELSQL 401
VFG+SL LV++ E P VL + + + R + GL + G+ +K L
Sbjct: 684 VFGISLSRLVQR------ERRDTPIVLTRLIQEIEKRGVDYSGLYVLCGSVEKKKMLRAE 737
Query: 402 IERQWYEDRGAVEAAVSLAKGHDLAAVYKRLLRALPQPLL 521
+E G AA S+ + +A + K LR LP+PL+
Sbjct: 738 LESN---PLGTELAAESIPDTNVIACLIKDFLRELPEPLI 774
>U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defective
protein 1, isoforma protein.
Length = 987
Score = 33.5 bits (73), Expect = 0.094
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Frame = +3
Query: 225 VFGVSLETLVRKDMILWEETCSAPSVLCCVTRALRARA-HHEGLLRVSGNKQKVSELSQL 401
VFG+SL LV++ E P VL + + + R + GL + G+ +K L
Sbjct: 752 VFGISLSRLVQR------ERRDTPIVLTRLIQEIEKRGVDYSGLYVLCGSVEKKKMLRAE 805
Query: 402 IERQWYEDRGAVEAAVSLAKGHDLAAVYKRLLRALPQPLL 521
+E G AA S+ + +A + K LR LP+PL+
Sbjct: 806 LESN---PLGTELAAESIPDTNVIACLIKDFLRELPEPLI 842
>AF546880-1|AAN38752.1| 942|Caenorhabditis elegans axon identity
specification proteinSYD-1 protein.
Length = 942
Score = 33.5 bits (73), Expect = 0.094
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Frame = +3
Query: 225 VFGVSLETLVRKDMILWEETCSAPSVLCCVTRALRARA-HHEGLLRVSGNKQKVSELSQL 401
VFG+SL LV++ E P VL + + + R + GL + G+ +K L
Sbjct: 684 VFGISLSRLVQR------ERRDTPIVLTRLIQEIEKRGVDYSGLYVLCGSVEKKKMLRAE 737
Query: 402 IERQWYEDRGAVEAAVSLAKGHDLAAVYKRLLRALPQPLL 521
+E G AA S+ + +A + K LR LP+PL+
Sbjct: 738 LESN---PLGTELAAESIPDTNVIACLIKDFLRELPEPLI 774
>U80955-10|AAN65297.2| 475|Caenorhabditis elegans Hypothetical
protein T04C9.1c protein.
Length = 475
Score = 31.1 bits (67), Expect = 0.50
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +3
Query: 309 CVTRALRARAHHEGLLRVSGNKQKVSELSQL-IERQWYEDRGAVEAAVSLAKGHDLAAVY 485
C+ + H +G+ R G KV ++ L ++R+ ++G + + +++
Sbjct: 76 CIDILEESGIHEQGVYRNCGVTSKVQKMMMLGLDRRKASEKGGLNLRDDEWETKTISSAV 135
Query: 486 KRLLRALPQPLL 521
K LR LP+PL+
Sbjct: 136 KTFLRNLPEPLM 147
>U80955-9|AAN65296.1| 863|Caenorhabditis elegans Hypothetical
protein T04C9.1b protein.
Length = 863
Score = 31.1 bits (67), Expect = 0.50
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +3
Query: 309 CVTRALRARAHHEGLLRVSGNKQKVSELSQL-IERQWYEDRGAVEAAVSLAKGHDLAAVY 485
C+ + H +G+ R G KV ++ L ++R+ ++G + + +++
Sbjct: 416 CIDILEESGIHEQGVYRNCGVTSKVQKMMMLGLDRRKASEKGGLNLRDDEWETKTISSAV 475
Query: 486 KRLLRALPQPLL 521
K LR LP+PL+
Sbjct: 476 KTFLRNLPEPLM 487
>U80955-8|AAN65295.1| 881|Caenorhabditis elegans Hypothetical
protein T04C9.1a protein.
Length = 881
Score = 31.1 bits (67), Expect = 0.50
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +3
Query: 309 CVTRALRARAHHEGLLRVSGNKQKVSELSQL-IERQWYEDRGAVEAAVSLAKGHDLAAVY 485
C+ + H +G+ R G KV ++ L ++R+ ++G + + +++
Sbjct: 416 CIDILEESGIHEQGVYRNCGVTSKVQKMMMLGLDRRKASEKGGLNLRDDEWETKTISSAV 475
Query: 486 KRLLRALPQPLL 521
K LR LP+PL+
Sbjct: 476 KTFLRNLPEPLM 487
>Z81130-4|CAB03414.2| 512|Caenorhabditis elegans Hypothetical
protein T23G11.5 protein.
Length = 512
Score = 30.7 bits (66), Expect = 0.66
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +3
Query: 345 EGLLRVSGNKQKVSELSQLIERQWYEDRGAVEAAVSLAKGHDLAAVYKRLLRALPQPLL 521
EG+ R+S K ++ EL E R + A HD A + KR LR +P+P++
Sbjct: 91 EGIYRLSPPKSRLDEL---------ERRANCGEKMIFADAHDAAGLIKRFLRQIPEPVV 140
>Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical
protein F22B5.7 protein.
Length = 1415
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 339 HHEGLLRVSGNKQKVSELSQLIERQWYEDRGAVEAAVSLA 458
H L + GN+ KVS +SQL + + + A+++ V LA
Sbjct: 636 HISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLA 675
>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
protein protein.
Length = 1439
Score = 27.5 bits (58), Expect = 6.2
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = +3
Query: 348 GLLRVSGNKQKVSELSQLIERQWYE--DRGAVEAAVSLAKGHDL-AAVYKRLLRALPQPL 518
G+ R+ GN V+ L + + + ++ D VE+ + ++ +++ K LR LP+PL
Sbjct: 816 GIYRIPGNTAAVNALKESLSNRGFDSVDLSKVESLDPRWRDVNVVSSLLKMFLRKLPEPL 875
Query: 519 L 521
L
Sbjct: 876 L 876
>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical
protein C04D8.1 protein.
Length = 1317
Score = 27.5 bits (58), Expect = 6.2
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = +3
Query: 348 GLLRVSGNKQKVSELSQLIERQWYE--DRGAVEAAVSLAKGHDL-AAVYKRLLRALPQPL 518
G+ R+ GN V+ L + + + ++ D VE+ + ++ +++ K LR LP+PL
Sbjct: 694 GIYRIPGNTAAVNALKESLSNRGFDSVDLSKVESLDPRWRDVNVVSSLLKMFLRKLPEPL 753
Query: 519 L 521
L
Sbjct: 754 L 754
>AF045646-3|AAK29836.2| 432|Caenorhabditis elegans Hypothetical
protein F56B3.2a protein.
Length = 432
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = -3
Query: 270 GSCPCGPASLRTRRTRSPLPSASFWVASSSGRAASTCR 157
G C C P TR + LP + A R +S CR
Sbjct: 54 GKCRCHPHYTETRDEKGRLPKCAPLPAKIGARCSSKCR 91
>AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.
Length = 1415
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 339 HHEGLLRVSGNKQKVSELSQLIERQWYEDRGAVEAAVSLA 458
H L + GN+ KVS +SQL + + + A+++ V LA
Sbjct: 636 HISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLA 675
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,214,034
Number of Sequences: 27780
Number of extensions: 159258
Number of successful extensions: 726
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -