Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305G12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    27   0.15 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.5  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   5.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   5.8  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 115 SACSRYCGWSSRRYSTSTRCPSRRGSHPKRSGRKRAPCSACP*RRWSART 264
           S CS+     S   + S  CP+ R +H K SG  R   +  P RR S  +
Sbjct: 363 SKCSQTSVHYSNGQTHSQLCPTPRSTHLKVSGINRVGSTRRPSRRNSCES 412


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 288 CTSPPTGSCPCGPASLRTRRTRSP 217
           C+ PP  + P    S R RR R+P
Sbjct: 392 CSPPPRQTPPSRKESGRRRRRRTP 415


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/43 (23%), Positives = 18/43 (41%)
 Frame = +3

Query: 264 MILWEETCSAPSVLCCVTRALRARAHHEGLLRVSGNKQKVSEL 392
           + +W        ++   +R L +  +HE +LR    K  V  L
Sbjct: 224 IFIWAYVIPLIFIILFYSRLLSSIRNHEKMLREQAKKMNVKSL 266


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/43 (23%), Positives = 18/43 (41%)
 Frame = +3

Query: 264 MILWEETCSAPSVLCCVTRALRARAHHEGLLRVSGNKQKVSEL 392
           + +W        ++   +R L +  +HE +LR    K  V  L
Sbjct: 224 IFIWAYVIPLIFIILFYSRLLSSIRNHEKMLREQAKKMNVKSL 266


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,397
Number of Sequences: 438
Number of extensions: 1791
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)