Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305G12f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47310.1 68415.m05906 flowering time control protein-related ...    28   3.3  
At1g50920.1 68414.m05725 GTP-binding protein-related similar to ...    28   4.4  
At3g44716.1 68416.m04812 hypothetical protein                          27   7.7  

>At2g47310.1 68415.m05906 flowering time control protein-related /
           FCA gamma-related 
          Length = 512

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 279 PPTGSCPCGPASLRTRRTRSPLPSASFWVA 190
           PP    PCG +SLR RR++S   +A   +A
Sbjct: 81  PPFPPSPCGGSSLRKRRSQSATDNADGSIA 110


>At1g50920.1 68414.m05725 GTP-binding protein-related similar to
           GTP-binding protein SP:Q99ME9 from [Mus musculus]
          Length = 671

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 27  LDRQMMSHDEDWPEADSNVDIESISEPQLKRLQPL 131
           L+R+    +    EAD  +DIE +S+ QLK+L  +
Sbjct: 465 LEREEGIREAGVEEADMEMDIEKLSDEQLKQLSEI 499


>At3g44716.1 68416.m04812 hypothetical protein
          Length = 111

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -2

Query: 358 LSSPSWCARARSARVTQHSTLGALHVSSHRIMSLRTSVSKDTPNTEP 218
           +S+PS     RS ++   S+ G  HVS    + LR  VS +     P
Sbjct: 38  ISNPSELITCRSGKLYFKSSTGLFHVSGTEEVKLRARVSMEVEGHIP 84


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,874,942
Number of Sequences: 28952
Number of extensions: 152371
Number of successful extensions: 568
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)