Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305G10f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)              264   2e-71
SB_31152| Best HMM Match : DUF112 (HMM E-Value=4.3)                    30   1.0  
SB_7313| Best HMM Match : IQ (HMM E-Value=0.00059)                     30   1.0  
SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82)          29   2.3  
SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_57068| Best HMM Match : NAD4L (HMM E-Value=9.4)                     29   3.1  
SB_34357| Best HMM Match : UBX (HMM E-Value=0.28)                      27   7.1  
SB_43472| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_55696| Best HMM Match : SNF7 (HMM E-Value=0)                        27   9.4  
SB_55695| Best HMM Match : SNF7 (HMM E-Value=0)                        27   9.4  
SB_51940| Best HMM Match : Glyco_transf_22 (HMM E-Value=1.8)           27   9.4  

>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score =  264 bits (648), Expect = 2e-71
 Identities = 123/172 (71%), Positives = 142/172 (82%)
 Frame = +1

Query: 1   SLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRAR 180
           +L+LQKRLAAS+++CGKKK+WLDPNE NEIAN NSRQN+RK+IKDGL+IKKP  VHSRAR
Sbjct: 31  TLRLQKRLAASLLKCGKKKIWLDPNECNEIANANSRQNVRKLIKDGLIIKKPEIVHSRAR 90

Query: 181 VRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHS 360
           VRK  EAR KGRH G GKR+GTANARMPQK +W                AKKID H+YHS
Sbjct: 91  VRKADEARSKGRHSGHGKRKGTANARMPQKTIWIRRMRVLRRLLRKYREAKKIDNHMYHS 150

Query: 361 LYMKAKGNVFKNKRVLMEYIHRKKAEKARTXMLSDQAEARRNKVKEARKRRE 516
           LYMK+KGNVFKNKRVLMEYIH+KKAEKAR+ +LSDQAEARRNK K A++RR+
Sbjct: 151 LYMKSKGNVFKNKRVLMEYIHKKKAEKARSKLLSDQAEARRNKNKAAKQRRD 202


>SB_31152| Best HMM Match : DUF112 (HMM E-Value=4.3)
          Length = 400

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = -3

Query: 267 LWHTRIGCTSSLTKATVTTLSTCFCVFADTSAGVYCYRFLDDETILDHLTDVLSGV 100
           L++TR+ C SSL    VT  S  + V      G+Y  R   D  +   L  VL G+
Sbjct: 108 LYNTRVTCDSSLYNTRVTCDSRMYLVLLTVLPGLYNTRVTCDSRMYLVLLTVLPGL 163


>SB_7313| Best HMM Match : IQ (HMM E-Value=0.00059)
          Length = 104

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 23/62 (37%), Positives = 31/62 (50%)
 Frame = +1

Query: 331 KKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTXMLSDQAEARRNKVKEARKR 510
           K I RHL      K K    +N   +ME + +K+A      M  +QAE  R K +E RKR
Sbjct: 18  KYIRRHLAKKQLKKLKDEK-QNYEEMMEKL-QKEAWLKIVQMEREQAEKERQKEEEERKR 75

Query: 511 RE 516
           R+
Sbjct: 76  RK 77


>SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -2

Query: 301 LKPFVFVPIVPSVAY--AHWLYLFSYQSHSDDPFYVLLCFCGH 179
           +K + F+P    V +    W +  ++  H+DDPF V    C H
Sbjct: 72  IKDYSFLPCCFKVCHRTCFWRWAHNHSIHADDPFEVACPHCRH 114


>SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82)
          Length = 646

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -2

Query: 301 LKPFVFVPIVPSVAY--AHWLYLFSYQSHSDDPFYVLLCFCGH 179
           +K + F+P    V +    W +  ++  H+DDPF V    C H
Sbjct: 72  IKDYSFLPCCFKVCHRTCFWRWAHNHSIHADDPFEVACPHCRH 114


>SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 172 RARVRKNTEARRKGRHCGFGKRRGTANAR 258
           +A  RK    RR+ R  G  K+R TANAR
Sbjct: 17  KANSRKKRRRRRRPRLTGLSKQRQTANAR 45


>SB_57068| Best HMM Match : NAD4L (HMM E-Value=9.4)
          Length = 177

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -3

Query: 267 LWHTRIGCTSSLTKATVTTLSTCFCVFADTSAGVYCYRFLDDETILDHLTDVLSGV 100
           L++TR+ C S L  A VT  S  + V      G+Y  R   D  +   +  VL G+
Sbjct: 68  LYNTRVTCGSRLYNARVTCDSRMYLVLLTVLQGLYNTRVTCDSRMYLVILTVLPGL 123


>SB_34357| Best HMM Match : UBX (HMM E-Value=0.28)
          Length = 219

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 385 VFKNKRVLMEYIHRKKAEKARTXMLSDQAEARRNKVKEARKRR 513
           +FK +R  +E   R   EK R  +  +Q   ++ ++++ R+RR
Sbjct: 47  IFKEQREQLEESSRIDKEKDRLRLEEEQELTKQEEIRQKRRRR 89


>SB_43472| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 385 VFKNKRVLMEYIHRKKAEKARTXMLSDQAEARRNKVKEARKRR 513
           +FK +R  +E   R   EK R  +  +Q   ++ ++++ R+RR
Sbjct: 67  IFKEQREQLEESSRIDKEKDRLRLEEEQELTKQEEIRQKRRRR 109


>SB_55696| Best HMM Match : SNF7 (HMM E-Value=0)
          Length = 225

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 373 AKGNVFKNKRVLMEYIHRKK 432
           AK NV KNKR+ ++ + RKK
Sbjct: 61  AKANVKKNKRIALQALKRKK 80


>SB_55695| Best HMM Match : SNF7 (HMM E-Value=0)
          Length = 225

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 373 AKGNVFKNKRVLMEYIHRKK 432
           AK NV KNKR+ ++ + RKK
Sbjct: 61  AKANVKKNKRIALQALKRKK 80


>SB_51940| Best HMM Match : Glyco_transf_22 (HMM E-Value=1.8)
          Length = 414

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = -3

Query: 267 LWHTRIGCTSSLTKATVTTLSTCFCVFADTSAGVYCYRFLDDETILDHLTDVLSGV 100
           L++T + C S L  A VT  S  + V      G+Y  R   D  +   L  VL G+
Sbjct: 192 LYNTGVTCDSCLYNARVTCDSRMYLVLLTVLPGLYNTRVTCDSRMYLVLLTVLPGL 247


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,876,412
Number of Sequences: 59808
Number of extensions: 362619
Number of successful extensions: 1109
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)