Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305G10f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi...   224   2e-59
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi...   223   4e-59
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi...   222   1e-58
At4g16030.1 68417.m02432 60S ribosomal protein L19, putative sim...    46   2e-05
At2g32630.1 68415.m03983 pentatricopeptide (PPR) repeat-containi...    29   1.9  
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro...    28   3.3  
At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol p...    28   4.4  
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro...    27   5.8  
At3g04340.1 68416.m00459 FtsH protease family protein similar to...    27   5.8  
At2g32000.1 68415.m03910 DNA topoisomerase family protein simila...    27   5.8  
At5g03500.1 68418.m00306 transcriptional co-activator-related lo...    27   7.7  
At5g03220.1 68418.m00270 transcriptional co-activator-related co...    27   7.7  
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:...    27   7.7  

>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
           to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
          Length = 209

 Score =  224 bits (548), Expect = 2e-59
 Identities = 104/171 (60%), Positives = 127/171 (74%)
 Frame = +1

Query: 1   SLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRAR 180
           SLK+QKRLAASVM+CGK KVWLDPNE  +I+  NSRQNIRK++KDG +I+KP  +HSR+R
Sbjct: 3   SLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSRSR 62

Query: 181 VRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHS 360
            R   EA+RKGRH G+GKR+GT  AR+P K LW                +KKIDRH+YH 
Sbjct: 63  ARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHD 122

Query: 361 LYMKAKGNVFKNKRVLMEYIHRKKAEKARTXMLSDQAEARRNKVKEARKRR 513
           +YMK KGNVFKNKRVLME IH+ KAEKAR   L+DQ EA+R K K +R+R+
Sbjct: 123 MYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRERK 173


>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
           to L19 from several species
          Length = 208

 Score =  223 bits (546), Expect = 4e-59
 Identities = 103/171 (60%), Positives = 128/171 (74%)
 Frame = +1

Query: 1   SLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRAR 180
           SLKLQKRLA+SV++CGK+KVWLDPNE ++I+  NSRQNIRK++KDG +I+KP  +HSR+R
Sbjct: 3   SLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSR 62

Query: 181 VRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHS 360
            R+   A+RKGRH G+GKR+GT  AR+P K LW                 KKIDRH+YH 
Sbjct: 63  ARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHD 122

Query: 361 LYMKAKGNVFKNKRVLMEYIHRKKAEKARTXMLSDQAEARRNKVKEARKRR 513
           +YMK KGNVFKNKRVLME IH+ KAEKAR   LSDQ EA+R K K +R+R+
Sbjct: 123 MYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERK 173


>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
           to ribosomal protein L19 GI:36127 from [Homo sapiens]
          Length = 214

 Score =  222 bits (542), Expect = 1e-58
 Identities = 103/171 (60%), Positives = 126/171 (73%)
 Frame = +1

Query: 1   SLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRAR 180
           SLKLQKRLAASVM+CGK KVWLDPNE ++I+  NSRQNIRK++KDG +I+KP  +HSR+R
Sbjct: 3   SLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSR 62

Query: 181 VRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHS 360
            RK   A+ KGRH G+GKR+GT  AR+P K LW                 KKID+H+YH 
Sbjct: 63  ARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHD 122

Query: 361 LYMKAKGNVFKNKRVLMEYIHRKKAEKARTXMLSDQAEARRNKVKEARKRR 513
           +YM+ KGNVFKNKRVLME IH+ KAEKAR   LSDQ EA+R K K +R+R+
Sbjct: 123 MYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERK 173


>At4g16030.1 68417.m02432 60S ribosomal protein L19, putative
           similar to 60S ribosomal protein L19-3
           (Swiss-Prot:P49693) [Arabidopsis thaliana]
          Length = 101

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 20/38 (52%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
 Frame = +1

Query: 331 KKIDRHLY-HSLYMKAKGNVFKNKRVLMEYIHRKKAEK 441
           KKID+ +Y H ++MK KG V+KNK VLME +H+   E+
Sbjct: 29  KKIDKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRER 66


>At2g32630.1 68415.m03983 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 624

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = +1

Query: 361 LYMKAKGNVFKNKRVLMEYIHRKKAEKARTXMLSDQAEARRNKVKEARKRR 513
           +Y K +GNV + KR+ +E   +     A T  +   A  ++ K+KEARK R
Sbjct: 478 VYCK-EGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLR 527


>At1g59910.1 68414.m06749 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 929

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 133 DGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 252
           D +  KK + + +  ++RKN + RR+G   G G RR  A+
Sbjct: 77  DVIYWKKLLELENSGKIRKNPKPRRRGDKSGDGFRRTGAD 116


>At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol
           protease, putative similar to cysteine proteinase RD21A
           precursor (thiol protease) GI:435619, SP:P43297 from
           [Arabidopsis thaliana]
          Length = 463

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 155 GFLMTRPSLIILRMFCLELVFAISLISFGSNH 60
           GFL   P +++L M  +     +S+IS+  NH
Sbjct: 2   GFLKLSPMILLLAMIGVSYAMDMSIISYDENH 33


>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
           similarity to SP|O22315 Pre-mRNA splicing factor SF2
           (SR1 protein) {Arabidopsis thaliana}
          Length = 300

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 169 SRARVRKNTEARRKGRHCGFGKRRGTANARMPQKEL 276
           SR+R R  + +R +GR     + R  + ++ P+K+L
Sbjct: 209 SRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSPRKDL 244


>At3g04340.1 68416.m00459 FtsH protease family protein similar to
           chloroplast FtsH protease [Arabidopsis thaliana]
           GI:1483215; contains Pfam profiles PF01434: Peptidase
           family M41, PF00004: ATPase AAA family
          Length = 960

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 328 AKKIDRHLYHSLYMKAKGNVFKNKRVL 408
           A K+++ +Y   Y KAKG + KN+RVL
Sbjct: 870 AGKVEK-IYDLAYEKAKGMLLKNRRVL 895


>At2g32000.1 68415.m03910 DNA topoisomerase family protein similar
           to DNA topoisomerase III beta-1 (EC 5.99.1.2)(SP:Q9Z321)
           {Mus musculus}
          Length = 865

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 133 DGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGT 246
           D L++      H R+ VR+    R +GR  G G RRG+
Sbjct: 816 DELLLSLVEVKHGRSFVRRGGRGRGRGRGRGRGGRRGS 853


>At5g03500.1 68418.m00306 transcriptional co-activator-related low
           similarity to transcriptional co-activator CRSP33 [Homo
           sapiens] GI:4220890
          Length = 443

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/60 (21%), Positives = 30/60 (50%)
 Frame = +1

Query: 337 IDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTXMLSDQAEARRNKVKEARKRRE 516
           +DR   ++  +    ++FKN   L+  +   +A      ++  Q + R+  V++ ++RRE
Sbjct: 93  VDRPSQYAKRIGEISSIFKNLHHLLNSLRPHQARATLIHIMELQIQQRKQAVEDIKRRRE 152


>At5g03220.1 68418.m00270 transcriptional co-activator-related
           contains weak similarity to Cofactor required for Sp1
           transcriptional activation subunit 9 (Transcriptional
           co-activator CRSP33) (RNA polymerase transcriptional
           regulation mediator subunit 7 homolog) (hMED7)
           (Activator-recruited cofactor 34 kDa component) (ARC34)
           (Swiss-Prot:O43513) [Homo sapiens]
          Length = 168

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/60 (21%), Positives = 30/60 (50%)
 Frame = +1

Query: 337 IDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTXMLSDQAEARRNKVKEARKRRE 516
           +DR   ++  +    ++FKN   L+  +   +A      ++  Q + R+  V++ ++RRE
Sbjct: 93  VDRPSQYAKRIGEISSIFKNLHHLLNSLRPHQARATLIHIMELQIQQRKQAVEDIKRRRE 152


>At1g04600.1 68414.m00454 myosin, putative similar to myosin
           (GI:499047) [Arabidopsis thaliana]
          Length = 1730

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -1

Query: 320 YFRSNFLKTLCLCTHSSFCGIRALAVPLLLPKPQ*RPFLRASVFLRTRAREC 165
           Y   N  KTLC    S   G+RA A  + L   Q R   RA++ ++++ R C
Sbjct: 796 YICQNAYKTLCSSACSIQTGMRAKAARIEL---QLRKKRRATIIIQSQIRRC 844


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,488,593
Number of Sequences: 28952
Number of extensions: 242691
Number of successful extensions: 655
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)