Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305G09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   3.0  
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    26   3.9  
SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    26   3.9  
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    25   5.2  

>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -2

Query: 325 CFHSKTITSCINLINIKFSIQTIEVKMAH--RNVLNLFKQKYFI 200
           CF       C N +N ++S+  +   MA    +VLN   QK F+
Sbjct: 115 CFSRANPIKCSNQVNTQYSVSFLFTIMASVLISVLNYISQKIFL 158


>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +2

Query: 416 KLLFLNNINGNVSSVYEKLLLLSMFRMRKSFLS 514
           +L+  NN+ G  S V EKL  LS  R  KSF S
Sbjct: 101 ELIVCNNVFG--SKVLEKLFPLSTSRQIKSFFS 131


>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 206 FYYLCFSYQRGSIICFMIYSYFWTVILIA*IIPTVLMSRKKVIL 75
           F   CF+Y  G  I + +YS F T  ++     T+  + KK++L
Sbjct: 278 FVVSCFTYFLGDGIEYALYSLFITTTVLG--FGTIRRTSKKMVL 319


>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 444 PFILFKNNSFGCRKLSPEIFISLFNLNHNFSKRK 343
           P I + NNS  C KL+ E+  ++ + +  F+ RK
Sbjct: 173 PVIRYDNNSLLCLKLAEEVSYTIQHESQLFNFRK 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,980,111
Number of Sequences: 5004
Number of extensions: 38482
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)