Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305G09f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59410| Best HMM Match : Rsd_AlgQ (HMM E-Value=6.5)                  31   0.76 
SB_55200| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)                31   0.76 
SB_49614| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)                31   0.76 
SB_47439| Best HMM Match : E6 (HMM E-Value=3.2)                        31   0.76 
SB_40579| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)                31   0.76 
SB_27702| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.76 
SB_26781| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.76 
SB_10674| Best HMM Match : E6 (HMM E-Value=3.2)                        31   0.76 
SB_55070| Best HMM Match : OAR (HMM E-Value=0.92)                      31   0.76 
SB_18736| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  

>SB_59410| Best HMM Match : Rsd_AlgQ (HMM E-Value=6.5)
          Length = 180

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
 Frame = +1

Query: 19  FRNLKLLGI*VVKSRFY----IHNITFFLDIKTVGIIYAISI 132
           + N  L G  V+K  FY    IH++TF L+ K + ++YA ++
Sbjct: 107 YHNTALRGESVLKGHFYLRDNIHDMTFTLNEKRIAVVYAATV 148


>SB_55200| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)
          Length = 929

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
 Frame = +1

Query: 19  FRNLKLLGI*VVKSRFY----IHNITFFLDIKTVGIIYAISI 132
           + N  L G  V+K  FY    IH++TF L+ K + ++YA ++
Sbjct: 856 YHNTALRGESVLKGHFYLRDNIHDMTFTLNEKRIAVVYAATV 897


>SB_49614| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)
          Length = 838

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
 Frame = +1

Query: 19  FRNLKLLGI*VVKSRFY----IHNITFFLDIKTVGIIYAISI 132
           + N  L G  V+K  FY    IH++TF L+ K + ++YA ++
Sbjct: 765 YHNTALRGESVLKGHFYLRDNIHDMTFTLNEKRIAVVYAATV 806


>SB_47439| Best HMM Match : E6 (HMM E-Value=3.2)
          Length = 436

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
 Frame = +1

Query: 19  FRNLKLLGI*VVKSRFY----IHNITFFLDIKTVGIIYAISI 132
           + N  L G  V+K  FY    IH++TF L+ K + ++YA ++
Sbjct: 363 YHNTALRGESVLKGHFYLRDNIHDMTFTLNEKRIAVVYAATV 404


>SB_40579| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)
          Length = 929

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
 Frame = +1

Query: 19  FRNLKLLGI*VVKSRFY----IHNITFFLDIKTVGIIYAISI 132
           + N  L G  V+K  FY    IH++TF L+ K + ++YA ++
Sbjct: 856 YHNTALRGESVLKGHFYLRDNIHDMTFTLNEKRIAVVYAATV 897


>SB_27702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
 Frame = +1

Query: 19  FRNLKLLGI*VVKSRFY----IHNITFFLDIKTVGIIYAISI 132
           + N  L G  V+K  FY    IH++TF L+ K + ++YA ++
Sbjct: 25  YHNTALRGESVLKGHFYLRDNIHDMTFTLNEKRIAVVYAATV 66


>SB_26781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
 Frame = +1

Query: 19  FRNLKLLGI*VVKSRFY----IHNITFFLDIKTVGIIYAISI 132
           + N  L G  V+K  FY    IH++TF L+ K + ++YA ++
Sbjct: 634 YHNTALRGESVLKGHFYLRDNIHDMTFTLNEKRIAVVYAATV 675


>SB_10674| Best HMM Match : E6 (HMM E-Value=3.2)
          Length = 436

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
 Frame = +1

Query: 19  FRNLKLLGI*VVKSRFY----IHNITFFLDIKTVGIIYAISI 132
           + N  L G  V+K  FY    IH++TF L+ K + ++YA ++
Sbjct: 363 YHNTALRGESVLKGHFYLRDNIHDMTFTLNEKRIAVVYAATV 404


>SB_55070| Best HMM Match : OAR (HMM E-Value=0.92)
          Length = 396

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
 Frame = +1

Query: 19  FRNLKLLGI*VVKSRFY----IHNITFFLDIKTVGIIYAISI 132
           + N  L G  V+K  FY    IH++TF L+ K + ++YA ++
Sbjct: 323 YHNTALRGESVLKGHFYLRDNIHDMTFTLNEKRIAVVYAATV 364


>SB_18736| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1452

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 4/32 (12%)
 Frame = +1

Query: 49   VVKSRFY----IHNITFFLDIKTVGIIYAISI 132
            V+K  FY    IH++TF L+ K + ++YA ++
Sbjct: 1418 VLKGHFYLRDNIHDMTFTLNEKRIAVVYAATV 1449


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,131,125
Number of Sequences: 59808
Number of extensions: 233765
Number of successful extensions: 420
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)