Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305G09f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27690.1 68417.m03981 vacuolar protein sorting-associated pro...    27   7.7  
At1g53420.1 68414.m06054 serine/threonine protein kinase-related...    27   7.7  

>At4g27690.1 68417.m03981 vacuolar protein sorting-associated
           protein 26, putative / VPS26, putative similar to
           vacuolar sorting protein 26 [Homo sapiens] GI:9622852;
           contains Pfam profile PF03643: Vacuolar protein
           sorting-associated protein 26
          Length = 303

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -2

Query: 286 INIKFSIQTIEVKMAHRNVLNLFKQKYFIICALVTKE 176
           I ++  +   ++   HRN+ N F  KY++   LV +E
Sbjct: 246 IPVRLFLAPYDLTPTHRNINNKFSVKYYLNLVLVDEE 282


>At1g53420.1 68414.m06054 serine/threonine protein kinase-related
           contains 1 predicted transmembrane domain; low
           similarity to receptor-like serine/threonine kinase
           [Arabidopsis thaliana] GI:2465923
          Length = 953

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 419 LLFLNNINGNVSSVYEKLLLLSMFRMRKSFLS 514
           +L  NN NG + S + KL  L  FR+  + LS
Sbjct: 164 ILSSNNFNGEIPSTFAKLTTLRDFRVSDNQLS 195


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,405,445
Number of Sequences: 28952
Number of extensions: 167557
Number of successful extensions: 337
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)