Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305G07f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    29   0.033
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   2.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   2.9  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   3.8  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   3.8  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    22   3.8  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   6.6  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 28.7 bits (61), Expect = 0.033
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 310 YAHTPGTTIELTCEAAGSPAPSVHWFKND 396
           +++T G  +E  C A G+P P + W ++D
Sbjct: 35  FSNTTGAVVE--CSAHGNPTPDIIWVRSD 61



 Score = 28.7 bits (61), Expect = 0.033
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 322 PGTTIELTCEAAGSPAPSVHW 384
           PG ++ L C A+G+P P + W
Sbjct: 427 PGNSVFLKCIASGNPTPEITW 447



 Score = 27.1 bits (57), Expect = 0.10
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 334 IELTCEAAGSPAPSVHWFK 390
           + L C A G P+PS  W+K
Sbjct: 250 VALLCPAQGFPSPSFRWYK 268



 Score = 25.4 bits (53), Expect = 0.31
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +1

Query: 325 GTTIELTCEAAGSPAPSVHWFKNDSPV 405
           G     TC   G+P  ++ W K+  P+
Sbjct: 342 GRPATFTCNFEGNPIKTISWLKDGHPI 368



 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 313 AHTPGTTIELTCEAAGSPAPSVHW 384
           A   G+   + C+A G P P V W
Sbjct: 709 AFAQGSDAAVECKADGFPRPVVTW 732



 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 325 GTTIELTCEAAGSPAPSVHW 384
           G T+ + C  AG P  SV W
Sbjct: 525 GGTLIVHCPFAGHPVDSVVW 544



 Score = 21.0 bits (42), Expect = 6.6
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +1

Query: 334  IELTCEAAGSPAPSVHW 384
            + L C A G P P + W
Sbjct: 1324 VTLPCLAVGLPPPVITW 1340


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 329 VPGVCAYDGRGPCVIDKYL 273
           VPGV A   R PC I++ L
Sbjct: 197 VPGVVAMFSRKPCSINENL 215


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 329 VPGVCAYDGRGPCVIDKYL 273
           VPGV A   R PC I++ L
Sbjct: 197 VPGVVAMFSRKPCSINENL 215


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +1

Query: 448 PTSIARISSTLI 483
           PTS+ +ISSTL+
Sbjct: 75  PTSVTKISSTLL 86


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +1

Query: 235 IENGVQAKSDGSH--KYLSITQGPLPSYAHTPGTTIELTCEAA 357
           I+ G +A  +G +  KYL + +     Y H P T  E    AA
Sbjct: 429 IKFGRKADPNGDYIRKYLPVLKNMPSQYIHEPWTAPEQVQRAA 471


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +1

Query: 199 KHIKLLSDIDNSIENGVQAKSDGSHKYLSITQGPLPS 309
           K I+  S IDN   NG   +    H+   +   P P+
Sbjct: 218 KRIEEKSQIDNLFHNGFMQEQSTHHQGQLVVGLPAPT 254


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 271 HKYLSITQGPLPSYAHTPGT 330
           H+Y   T  PLPS  H+  T
Sbjct: 392 HQYGYNTLSPLPSSVHSHST 411


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,853
Number of Sequences: 336
Number of extensions: 2165
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)