Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305G07f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 29 0.42
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 1.3
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 27 2.2
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar... 26 3.9
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 3.9
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po... 25 5.2
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 25 6.8
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|... 25 9.0
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|... 25 9.0
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual 25 9.0
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 25 9.0
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 29.1 bits (62), Expect = 0.42
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +1
Query: 94 LRESHQYYRAVVRMHLVLL 150
L+ESHQ YR +V +HL LL
Sbjct: 297 LKESHQIYRKMVSLHLELL 315
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.5 bits (58), Expect = 1.3
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 5/95 (5%)
Frame = +1
Query: 232 SIENGVQAKSDGSHKYLSITQGPLPSYAH-----TPGTTIELTCEAAGSPAPSVHWFKND 396
S +N K+D S + T +Y++ T T + T E S + N
Sbjct: 244 STQNPTANKTDASQQSTESTSSSASAYSYITTLQTATTAQQTTSENTYSTSGPNLTTSNT 303
Query: 397 SPVYEYDVESNELIDSSPTSIARISSTLIVTRTTS 501
SP + S+ I SP+ SST +T ++
Sbjct: 304 SPQISSTISSSSFIVESPSVALSTSSTTTITNAST 338
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 322 PGTTIELTCEAAGSPAPSVHWFKNDSP 402
PG T + TC GS +V++ KN P
Sbjct: 427 PGCTYDNTCSQRGSVIANVYFAKNKQP 453
>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
Byr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 181 QSAHLNKHIKLLSDIDNSIENGVQAKSDGSHKYLSITQ 294
Q AH+N+ +SD+DNS V+ +G+ +S+ +
Sbjct: 47 QCAHMNRRPAWISDLDNSSLEVVRHLGEGNGGAVSLVK 84
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.8 bits (54), Expect = 3.9
Identities = 16/76 (21%), Positives = 32/76 (42%)
Frame = +1
Query: 274 KYLSITQGPLPSYAHTPGTTIELTCEAAGSPAPSVHWFKNDSPVYEYDVESNELIDSSPT 453
K+L + + +TPG T ++ +P PS + + ++ + ++ T
Sbjct: 8 KFLLLVTAVMAQTEYTPGFTTDVATTVTPTPLPSANVTTTSFSSASTETSTHSVTSTNIT 67
Query: 454 SIARISSTLIVTRTTS 501
SI ST + TT+
Sbjct: 68 SIVPPPSTSHNSTTTT 83
>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 622
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 235 IENGVQAKSDGSHKYLSITQGPLPSYAHTPGTTIELT 345
+EN ++ K+ K ++ITQ P Y P +T+ELT
Sbjct: 268 LENCLECKTA---KVVNITQKPKTKYKPLPLSTVELT 301
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.0 bits (52), Expect = 6.8
Identities = 17/58 (29%), Positives = 23/58 (39%)
Frame = +1
Query: 166 LLGSCQSAHLNKHIKLLSDIDNSIENGVQAKSDGSHKYLSITQGPLPSYAHTPGTTIE 339
+L CQ H L+DI SI + DG Y+S G + + G IE
Sbjct: 549 MLTYCQDGISLTHSLKLTDIPRSIVYSQKYGDDGGTLYVSTNNGYVLMFNFQNGQVIE 606
>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
3|||Manual
Length = 393
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 196 NKHIKLLSDIDNSIENGVQAKSDGSHKYLSITQGPLPSYAHTPGTTI 336
NK+ L S +D + AK+D + + +GPLP Y G+T+
Sbjct: 3 NKYYPLRSSMDE-----LSAKNDNE---IDLEKGPLPEYNSEDGSTL 41
>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
3|||Manual
Length = 368
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 196 NKHIKLLSDIDNSIENGVQAKSDGSHKYLSITQGPLPSYAHTPGTTI 336
NK+ L S +D + AK+D + + +GPLP Y G+T+
Sbjct: 3 NKYYPLRSSMDE-----LSAKNDNE---IDLEKGPLPEYNSEDGSTL 41
>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 304
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +1
Query: 199 KHIKLLSDIDNSIENGVQAKSDGSHKYLSITQGPLPSYAH 318
KHI LL +I N + V + L + LPSY H
Sbjct: 203 KHIPLLENIRNKVLTEVPKQFSVDKNQLKMFVHYLPSYYH 242
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Frame = +1
Query: 136 HLVLLFTVAALLGSCQSAHLNKHIKLLSDIDNSIE------NGVQAKSDGSHKYL 282
H+V L+ AA S H I+++S DN E NG Q + G++ L
Sbjct: 411 HVVALYDYAAQAAGDLSFHAGDRIEVVSRTDNQNEWWIGRLNGAQGQFPGNYVQL 465
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,939,181
Number of Sequences: 5004
Number of extensions: 36837
Number of successful extensions: 131
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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