Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305G06f
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    25   5.6  
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   5.6  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    25   7.3  

>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 107 ICVNASLQFKN*TEI--HQLQSTTIIINCISQLFQLLAKTISNAEQW 241
           +C+   L+F N      + L    +I++CISQ+   L  +++   QW
Sbjct: 134 VCLYPMLRFANPKSANGYTLYFRPLIVSCISQIIGHLLYSLAYRAQW 180


>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 107 ICVNASLQFKN*TEI--HQLQSTTIIINCISQLFQLLAKTISNAEQW 241
           +C+   L+F N      + L    +I++CISQ+   L  +++   QW
Sbjct: 134 VCLYPMLRFANPKSANGYTLYFRPLIVSCISQIIGHLLYSLAYRAQW 180


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +2

Query: 59  FTTITQNSVSKSALLPICVNASLQFKN*TEIHQLQSTTIIINCISQLFQLLAKTISNAEQ 238
           + +++ N+V    LLP+CV  S   +N      +  T  I   +SQ+F  L+  + N  Q
Sbjct: 564 YGSLSSNAVLMPMLLPLCVLTSSCLQN----GDVWLTKDIRTGLSQIFNRLSFFLENTNQ 619


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,462,946
Number of Sequences: 5004
Number of extensions: 24419
Number of successful extensions: 48
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)