Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305G06f
         (459 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52818| Best HMM Match : CUB (HMM E-Value=1.6e-23)                   30   0.80 
SB_23756| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  

>SB_52818| Best HMM Match : CUB (HMM E-Value=1.6e-23)
          Length = 898

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +1

Query: 52  NKLYYNHSKLCFKICSPADLCERILT 129
           N ++Y++ ++C   C  +D+C R+LT
Sbjct: 762 NYVFYDYQQMCIGSCKLSDICVRVLT 787


>SB_23756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = -3

Query: 286 YFISLCIIIRYLLYTPLLSIA----YCLS*KLKQLRNTIDYDCGGLKLMYFSSVFK 131
           +F S C  ++ +  T L S++     CL+     ++N + Y+C G+ ++ F   FK
Sbjct: 322 HFFSYCPTLKSIELTDLTSVSDESIVCLAKCCPNIKNLLLYNCDGVTILGFQEFFK 377


>SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = -3

Query: 280 ISLCIIIRYLLYTPLLSIAYCLS 212
           +++C+++  + Y PLLS+ YCLS
Sbjct: 198 VTVCLLLS-VCYCPLLSVRYCLS 219


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,650,083
Number of Sequences: 59808
Number of extensions: 178121
Number of successful extensions: 319
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)