Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305G05f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20672| Best HMM Match : PHD (HMM E-Value=0.088)                     28   4.1  
SB_18564| Best HMM Match : ShTK (HMM E-Value=6.5)                      27   9.4  
SB_35182| Best HMM Match : CUB (HMM E-Value=0)                         27   9.4  

>SB_20672| Best HMM Match : PHD (HMM E-Value=0.088)
          Length = 142

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = -2

Query: 460 FDIFYSHNF*KIQRCVCHFMSITYHYHLPLYVTIRQKLGNA*VQFNPNFNWKYP 299
           F+ FYSHN    +  V    S + H HL L + +   LG   +Q NP   WK+P
Sbjct: 51  FEAFYSHNIRANKMNVGR--SSSEHKHLLLCLLL---LGGD-IQLNPGPKWKFP 98


>SB_18564| Best HMM Match : ShTK (HMM E-Value=6.5)
          Length = 348

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 203 FFYFKLNLIS*VSVEFNVAHLFGYKCI*SCIFRVFPIEIWIKLYLC 340
           F+ FK   I      ++V  ++GY  +  C F VF +  +  L +C
Sbjct: 21  FYVFKYAPIPSSECAYSVLRVYGYSLLRVCAFSVFRVYTYSILRVC 66


>SB_35182| Best HMM Match : CUB (HMM E-Value=0)
          Length = 963

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 46  PYRFVCTCTIHIKHHRLLRLSVFTTEYEQSLQCRYN 153
           P    C   I +   + + L++ T + EQS +CRY+
Sbjct: 117 PTDVTCEWVIRVGPKQAIELTIETIDIEQSKKCRYD 152


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,212,360
Number of Sequences: 59808
Number of extensions: 297468
Number of successful extensions: 517
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)