Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305G05f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78544-1|CAB01761.1|  218|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U41535-13|AAB63405.1| 1075|Caenorhabditis elegans Hypothetical p...    29   2.7  
Z68227-1|CAA92507.1|  320|Caenorhabditis elegans Hypothetical pr...    28   4.7  

>Z78544-1|CAB01761.1|  218|Caenorhabditis elegans Hypothetical
           protein K04G11.1 protein.
          Length = 218

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -3

Query: 501 KNELCDFHKNFMVFLTYFTATIFKRSRDVCATLC---LSPTTTTYHFMSLYVR 352
           KN +C F   +M FLT  T  ++++ + +   L    L P  T   F+ + +R
Sbjct: 107 KNFVCKFDIEYMCFLTLKTTNLYQKLQGIYIELLLLPLLPLATVLSFLFMQIR 159


>U41535-13|AAB63405.1| 1075|Caenorhabditis elegans Hypothetical
           protein F18A1.1 protein.
          Length = 1075

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 388 HYHLPLYVTIRQKLGNA*VQFNPNFNWKY 302
           H  LP YV +  KLG+  V+ + N  W+Y
Sbjct: 181 HNFLPKYVKLIDKLGSFAVRIDHNCRWRY 209


>Z68227-1|CAA92507.1|  320|Caenorhabditis elegans Hypothetical
           protein F49C12.2 protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 415 HISGSFKNCGCKICQKNHEVFMEVTKFIFNVKYVF 519
           H  G+F N G KICQ N E+  ++   +   + +F
Sbjct: 240 HRGGAFDNKGVKICQINTEIHKDLDNGVTGEQNMF 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,794,657
Number of Sequences: 27780
Number of extensions: 238181
Number of successful extensions: 439
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)