Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305G03f
         (502 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    22   3.6  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    21   4.7  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    21   4.7  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   6.2  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 15/73 (20%), Positives = 31/73 (42%)
 Frame = +3

Query: 270 ISDAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGH 449
           +SD   ++K   E     +   ++ ++  +K  I +A       HS     DI+E++  H
Sbjct: 31  VSDNRRSNKPIMEKR---RRARINNSLNELKTLILDAMKKDPARHSKLEKADILEMTVKH 87

Query: 450 MQKFLNEAKGLDA 488
           +Q    +   + A
Sbjct: 88  LQNLQRQQAAMSA 100


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 175 GTPSFCKNLFRTSGLD 128
           G P+F + +F+ SGLD
Sbjct: 507 GHPNFFRIVFQNSGLD 522


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = +3

Query: 318 LSKGQEVSGNIFYMKQNISNACGTIALVHSV 410
           L KG+++  N++Y+   + N    + L ++V
Sbjct: 89  LLKGRKIRKNLYYLLLFVINVLYVLTLCYAV 119


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 208 SPMTSTIFHLFGTPSFCKNLFRTSGLDSRG 119
           SP+++ I H   TP    N + + G   RG
Sbjct: 81  SPISNRIRHEMATPMATMNSYGSVGTLGRG 110


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,064
Number of Sequences: 336
Number of extensions: 2493
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11839801
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)