Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305G03f
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa...    66   3e-12
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc...    43   2e-05
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    28   0.91 
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    26   3.7  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    25   6.4  
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb...    25   6.4  
SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.4  
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    25   8.4  

>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
           Uch1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 66.1 bits (154), Expect = 3e-12
 Identities = 38/99 (38%), Positives = 60/99 (60%)
 Frame = +3

Query: 120 PLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKK 299
           PLE+ P+VL  +LQK+GV +  ++ D+  L+ E   ++PRPV +++ +FP S     +K 
Sbjct: 4   PLENTPEVLEPYLQKIGVQDA-SVFDLFSLE-EIPEYIPRPVHALLFVFPSSGTKTIYKG 61

Query: 300 TEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVAN 416
           +    IL K    S  + +  Q I NACGTI L+H+V+N
Sbjct: 62  SR---ILPKD---SDKVLWYPQTIPNACGTIGLLHAVSN 94


>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
           Uch2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 43.2 bits (97), Expect = 2e-05
 Identities = 33/126 (26%), Positives = 63/126 (50%)
 Frame = +3

Query: 123 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 302
           +ES+  V    ++ LGV +   + ++  LD ++L   P  +  ++ LF  +   +    T
Sbjct: 6   IESDAGVFTDLIENLGVKDV-EVDELYSLDVDSLRQFP-DIYGIIFLFKWNSKVDKPDGT 63

Query: 303 EENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGL 482
            + + +        NIF+ KQ I+NAC T AL+  + N++D I+L    + +F + +K L
Sbjct: 64  MDYDSMD-------NIFFAKQVINNACATQALLSVLLNHSDEIDLGT-TLSEFKDFSKTL 115

Query: 483 DATARG 500
               +G
Sbjct: 116 PPELKG 121


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 27.9 bits (59), Expect = 0.91
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -3

Query: 206 SHDIYNIPFVWYAELLQKLVQDIGIGFKRD*SFGRHFSHSNCGVDEGD 63
           +H   +  F W  E L + + DIG+    D S+G H   S    D GD
Sbjct: 133 AHSKIDKEFGWLLEDLDQEIDDIGVPGTEDPSYG-HSEDSEVSDDTGD 179


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
 Frame = +3

Query: 93  TEMATETLVPLESNPDVLNKFLQ-------KLGVPNKWNI-VDVMGLDPETLSWV 233
           ++  +E  +PLES PD L K +        K+G    W I V V    PE   W+
Sbjct: 318 SQHVSEWGIPLESAPDALEKLINYTVDDAGKIGAYTHWPIEVRVCAPTPEDECWL 372


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +2

Query: 338 FWKYFLYETKYQQCMWDYSS 397
           FW YF +      C WD S+
Sbjct: 237 FWAYFTFIASVLVCFWDESN 256


>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 298

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = +3

Query: 135 PDVLNKFLQKL-GVPNKW 185
           PDV NKFL+K+   P KW
Sbjct: 207 PDVANKFLEKVKTAPLKW 224


>SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 207 LDPETLSWVPRPVLSVMLLFPI 272
           LDP   +WV  P++ VM+L  I
Sbjct: 6   LDPALRNWVLLPIMFVMILIGI 27


>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
 Frame = +3

Query: 363 QNISNACGTIALVHSVANNTDIIELSDGHMQ------KFLNEAKGLD 485
           Q+ +   G ++L  +   N D+ +L +GH+Q      K L E  G D
Sbjct: 468 QSTAAGLGPVSLDSNTLENVDVGDLVEGHLQYRWLVAKILKERLGYD 514


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,071,296
Number of Sequences: 5004
Number of extensions: 42590
Number of successful extensions: 149
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)