Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305G03f
(502 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024774-1|AAM43789.1| 227|Caenorhabditis elegans Ubiquitin c-t... 89 2e-18
AF125955-1|AAD14718.1| 216|Caenorhabditis elegans Ubiquitin c-t... 88 3e-18
AC024774-2|AAM43790.1| 249|Caenorhabditis elegans Ubiquitin c-t... 86 1e-17
Z46676-9|CAA86665.2| 321|Caenorhabditis elegans Hypothetical pr... 37 0.007
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr... 28 3.3
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein. 28 3.3
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ... 28 3.3
Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z81543-5|CAB04427.2| 507|Caenorhabditis elegans Hypothetical pr... 27 5.8
AF099002-3|AAO91691.1| 570|Caenorhabditis elegans Hypothetical ... 27 5.8
AF099002-2|AAC68740.2| 556|Caenorhabditis elegans Hypothetical ... 27 5.8
AF099002-1|AAK68587.1| 559|Caenorhabditis elegans Hypothetical ... 27 5.8
Z46787-3|CAA86741.1| 1032|Caenorhabditis elegans Hypothetical pr... 27 7.6
>AC024774-1|AAM43789.1| 227|Caenorhabditis elegans Ubiquitin
c-terminal hydrolase(family 1) protein 3 protein.
Length = 227
Score = 88.6 bits (210), Expect = 2e-18
Identities = 50/120 (41%), Positives = 72/120 (60%), Gaps = 2/120 (1%)
Frame = +3
Query: 123 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 302
LESNP+ +N FL+K+G+ VDV D E L +VP P L+++L FP ++A E K
Sbjct: 12 LESNPETINPFLKKIGITGL-ECVDVYSFDDEMLQFVPTPQLALILCFPSAEAREFLSKQ 70
Query: 303 EENEILSKGQEVSGNIFYMKQN--ISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAK 476
E E+ G++ G +F+M Q+ I NACGT AL HS+AN + + L G K+ +AK
Sbjct: 71 YE-EVEKNGEKPEG-VFFMNQSEEIGNACGTFALFHSLANLENRVNLGKGKFAKWYEKAK 128
>AF125955-1|AAD14718.1| 216|Caenorhabditis elegans Ubiquitin
c-terminal hydrolase(family 1) protein 1 protein.
Length = 216
Score = 88.2 bits (209), Expect = 3e-18
Identities = 52/121 (42%), Positives = 71/121 (58%), Gaps = 2/121 (1%)
Frame = +3
Query: 120 PLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKK 299
PLESNP V+N ++K+GV VDV+ D E++ +P +V+L FP +KK
Sbjct: 7 PLESNPSVINPMIEKMGVSGV-KTVDVLFFDDESIG---KPQHAVILCFP------EYKK 56
Query: 300 TEE--NEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEA 473
+E I + + ++F+MKQ ISNACGT AL HS+AN D I L DG K+L EA
Sbjct: 57 VDEIMKPIYEQAKAADDSVFFMKQKISNACGTFALFHSLANLEDRINLGDGSFAKWLAEA 116
Query: 474 K 476
K
Sbjct: 117 K 117
>AC024774-2|AAM43790.1| 249|Caenorhabditis elegans Ubiquitin
c-terminal hydrolase(family 1) protein 2 protein.
Length = 249
Score = 86.2 bits (204), Expect = 1e-17
Identities = 49/120 (40%), Positives = 70/120 (58%), Gaps = 2/120 (1%)
Frame = +3
Query: 123 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 302
LESNP+ +N FL K+GV VDV D E L ++P P L+++L FP S E K
Sbjct: 11 LESNPETINPFLSKIGVSGV-ECVDVFSFDDEMLQFIPTPQLALILCFPSSGVREFRAKQ 69
Query: 303 EENEILSKGQEVSGNIFYM--KQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAK 476
E E+ G++ G IF+M K+ I +ACGT +L HS+AN + + L +G K+ +AK
Sbjct: 70 YE-EVEKNGKKPDG-IFFMNQKKEIGHACGTFSLFHSLANLENRVNLGNGKFSKWFEKAK 127
>Z46676-9|CAA86665.2| 321|Caenorhabditis elegans Hypothetical
protein C08B11.7 protein.
Length = 321
Score = 37.1 bits (82), Expect = 0.007
Identities = 32/126 (25%), Positives = 56/126 (44%)
Frame = +3
Query: 123 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 302
+ES+P V + L+ GV + ++ LD + + RP ++ LF ++
Sbjct: 10 IESDPGVFTEMLRGFGVDGL-QVEELYSLDDDKA--MTRPTYGLIFLF-------KWRQG 59
Query: 303 EENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGL 482
+E + ++ NIF+ Q I NAC T AL++ + N D + ++ A L
Sbjct: 60 DETTGIPSDKQ---NIFFAHQTIQNACATQALINLLMNVEDTDVKLGNILNQYKEFAIDL 116
Query: 483 DATARG 500
D RG
Sbjct: 117 DPNTRG 122
>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical
protein C05C12.3 protein.
Length = 1694
Score = 28.3 bits (60), Expect = 3.3
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +3
Query: 198 VMGLDPETLSWVPRPVLSVMLLFPISDAYENH-KKTEENEILSKGQEVSGNIFYMKQNIS 374
+M + T +W+ L ++ + A +H T +N +++ G S + +
Sbjct: 262 IMKIAKSTDAWIITSGLDEGVVKHLDSALHDHGNHTSKNHVVAIGI-ASWGMLKQRSRFV 320
Query: 375 NACGTIALVHSVANNTDIIELSDGH 449
T+ +V NNT + EL+D H
Sbjct: 321 GKDSTVTYATNVFNNTRLKELNDNH 345
>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
Length = 1694
Score = 28.3 bits (60), Expect = 3.3
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +3
Query: 198 VMGLDPETLSWVPRPVLSVMLLFPISDAYENH-KKTEENEILSKGQEVSGNIFYMKQNIS 374
+M + T +W+ L ++ + A +H T +N +++ G S + +
Sbjct: 262 IMKIAKSTDAWIITSGLDEGVVKHLDSALHDHGNHTSKNHVVAIGI-ASWGMLKQRSRFV 320
Query: 375 NACGTIALVHSVANNTDIIELSDGH 449
T+ +V NNT + EL+D H
Sbjct: 321 GKDSTVTYATNVFNNTRLKELNDNH 345
>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1681
Score = 28.3 bits (60), Expect = 3.3
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +3
Query: 198 VMGLDPETLSWVPRPVLSVMLLFPISDAYENH-KKTEENEILSKGQEVSGNIFYMKQNIS 374
+M + T +W+ L ++ + A +H T +N +++ G S + +
Sbjct: 249 IMKIAKSTDAWIITSGLDEGVVKHLDSALHDHGNHTSKNHVVAIGI-ASWGMLKQRSRFV 307
Query: 375 NACGTIALVHSVANNTDIIELSDGH 449
T+ +V NNT + EL+D H
Sbjct: 308 GKDSTVTYATNVFNNTRLKELNDNH 332
>Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical
protein T07D4.4c protein.
Length = 613
Score = 27.9 bits (59), Expect = 4.4
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 93 TEMATETLVPLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPET 221
TE A E VP+ ++ +LNKF+QK K +VDV DP++
Sbjct: 162 TEEAHEQ-VPVPADIALLNKFIQKEVKMMKDVVVDVQRQDPKS 203
>Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical
protein T07D4.4b protein.
Length = 638
Score = 27.9 bits (59), Expect = 4.4
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 93 TEMATETLVPLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPET 221
TE A E VP+ ++ +LNKF+QK K +VDV DP++
Sbjct: 187 TEEAHEQ-VPVPADIALLNKFIQKEVKMMKDVVVDVQRQDPKS 228
>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
protein T07D4.4a protein.
Length = 1022
Score = 27.9 bits (59), Expect = 4.4
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 93 TEMATETLVPLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPET 221
TE A E VP+ ++ +LNKF+QK K +VDV DP++
Sbjct: 571 TEEAHEQ-VPVPADIALLNKFIQKEVKMMKDVVVDVQRQDPKS 612
>Z81543-5|CAB04427.2| 507|Caenorhabditis elegans Hypothetical
protein F49B2.5 protein.
Length = 507
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +3
Query: 339 SGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKG 479
SGN QNIS + +AL A D + + + LN+ +G
Sbjct: 46 SGNTIDKNQNISQSANFVALFQYDARTDDDLSFKKDDILEILNDTQG 92
>AF099002-3|AAO91691.1| 570|Caenorhabditis elegans Hypothetical
protein Y71H10B.1c protein.
Length = 570
Score = 27.5 bits (58), Expect = 5.8
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Frame = +3
Query: 276 DAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN----TDIIELSD 443
DA++ K E+L G + G++ K+ S T +V + N TD L D
Sbjct: 316 DAFQKMMKCRGKEVLYVGDHIFGDVLRSKK--SRGWRTFLVVPELVNELTVWTDSKPLFD 373
Query: 444 --GHMQKFLNEA-KGLDATAR 497
GHM+ L + K LD +R
Sbjct: 374 EMGHMESTLADIYKNLDGASR 394
>AF099002-2|AAC68740.2| 556|Caenorhabditis elegans Hypothetical
protein Y71H10B.1a protein.
Length = 556
Score = 27.5 bits (58), Expect = 5.8
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Frame = +3
Query: 276 DAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN----TDIIELSD 443
DA++ K E+L G + G++ K+ S T +V + N TD L D
Sbjct: 302 DAFQKMMKCRGKEVLYVGDHIFGDVLRSKK--SRGWRTFLVVPELVNELTVWTDSKPLFD 359
Query: 444 --GHMQKFLNEA-KGLDATAR 497
GHM+ L + K LD +R
Sbjct: 360 EMGHMESTLADIYKNLDGASR 380
>AF099002-1|AAK68587.1| 559|Caenorhabditis elegans Hypothetical
protein Y71H10B.1b protein.
Length = 559
Score = 27.5 bits (58), Expect = 5.8
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Frame = +3
Query: 276 DAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN----TDIIELSD 443
DA++ K E+L G + G++ K+ S T +V + N TD L D
Sbjct: 305 DAFQKMMKCRGKEVLYVGDHIFGDVLRSKK--SRGWRTFLVVPELVNELTVWTDSKPLFD 362
Query: 444 --GHMQKFLNEA-KGLDATAR 497
GHM+ L + K LD +R
Sbjct: 363 EMGHMESTLADIYKNLDGASR 383
>Z46787-3|CAA86741.1| 1032|Caenorhabditis elegans Hypothetical protein
C16C10.3 protein.
Length = 1032
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 428 YVRIVGHTMYKSYSPTCIADILFHIENISR 339
Y R GH + SY P + D+L+ EN+++
Sbjct: 943 YFRAFGHQV--SYQPPSVPDVLYAAENLAK 970
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,304,631
Number of Sequences: 27780
Number of extensions: 228924
Number of successful extensions: 644
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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