Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305G02f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC27.01c |||secretory pathway protein Pga2 |Schizosaccharomyce... 32 0.045
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 29 0.56
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po... 27 1.3
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce... 27 1.3
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M... 27 1.7
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18... 25 5.2
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 25 5.2
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 25 5.2
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce... 25 6.8
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 25 6.8
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 25 9.0
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 9.0
>SPBC27.01c |||secretory pathway protein Pga2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 132
Score = 32.3 bits (70), Expect = 0.045
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 190 NQEQVINPDGSYKWSYETGNGISAEEQGYIKNQ 288
++E+ NPD ++W Y I + + Y KNQ
Sbjct: 79 DEEEEENPDAEFRWGYSARRRIRKQREEYFKNQ 111
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 28.7 bits (61), Expect = 0.56
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 200 RSSIPMDHISGVTRQEMEFQLKSRAT*KTREYLNKRRR 313
R + M HI + +EMEFQLK+ + R+ L R R
Sbjct: 1044 RDAEGMSHIWQLRLREMEFQLKAEQEGRKRDKLGARER 1081
>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 451
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Frame = +1
Query: 160 VHN---TEPIPILNQEQVINPDGSYKWSYETGNGISAE 264
VHN EP+P N +V KW +G+ I++E
Sbjct: 217 VHNEVMAEPLPHSNNREVTQATNQPKWQIHSGSDIASE 254
>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 491 VLCRSGSVAKKSRAFCISAGTGGAVGKWAPCGWNPFSS 378
++C S S+A+ A S G A +AP GW P +S
Sbjct: 111 LICVSMSMAEICSAMPTSGGLYYAAAVFAPKGWGPLAS 148
>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 342
Score = 27.1 bits (57), Expect = 1.7
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = -2
Query: 322 PVPSAPLVQVFPGFLCSPALQLKFHFLSRNSTYMIHRD**PVPD*VWE*VRYYG 161
P P A V + P P ++ F L NST M H +PD + +R YG
Sbjct: 284 PGPDAQWVTILPARKLGPHMEHVFTNLQNNSTPMTHVRMIIIPDGGVKRLRIYG 337
>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
S18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 294 YSLVFYVALLFS*NSISCLVTPLI*SIGIDDLFLIKY 184
Y+L F+++ FS S L+ L+ + LF IKY
Sbjct: 9 YNLSFFISFTFSSIFFSSLILFLVYKSVLSKLFFIKY 45
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 287 REYLNKRRRRHRANINILRLTVKLYTSNIWRMK 385
R L K R+H + + + +L +KL T N MK
Sbjct: 825 RSILCKEARKHDSGLKLFKLGIKLCTRNEQIMK 857
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 219 SIGIDDLFLIKYGNRFGIMD 160
S G+ D FL+KYG+ I D
Sbjct: 77 SQGLKDTFLVKYGDLINIQD 96
>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 544
Score = 25.0 bits (52), Expect = 6.8
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Frame = -1
Query: 491 VLCRSGSVAKKSRAFCISAGTGGAVGKWAPCGWNPFSS-----ARYWTCIT*PSGAVY 333
V C + +A+ + S G A AP GW PF++ + Y +T P Y
Sbjct: 87 VQCVANGMAELCSSMPTSGGLYYAAAVLAPKGWGPFAAWLTGWSNYLVQVTGPPSVAY 144
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 25.0 bits (52), Expect = 6.8
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = +2
Query: 176 LFPYLIRNRSSIPMDHISGVTRQ 244
++P+ +R R+ + DHISG +++
Sbjct: 1407 IYPWQLRPRNGMHPDHISGFSKE 1429
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +1
Query: 430 VPAEIQKALDFLATLPLRHKTLENTSDI 513
+P+ +Q+++DFLA + H+ SD+
Sbjct: 213 IPSSLQQSMDFLAPEYITHEIAGPESDV 240
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +1
Query: 55 FQQFQHQPNYLQQVQPINSL 114
F + ++QPNY +V P N++
Sbjct: 984 FAEMENQPNYQPRVAPYNTM 1003
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.134 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,097,063
Number of Sequences: 5004
Number of extensions: 40569
Number of successful extensions: 75
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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