Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305G02f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_58221| Best HMM Match : TBC (HMM E-Value=2.9e-08)                   29   3.1  
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)                  28   4.1  
SB_1301| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.1  
SB_47596| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  

>SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 395

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 449 FCISAGTGGAVGKWAPCGWNPFS 381
           FC   GTG A+G W   GW  ++
Sbjct: 150 FCEKGGTGSAIGVWKNGGWTQYA 172


>SB_58221| Best HMM Match : TBC (HMM E-Value=2.9e-08)
          Length = 580

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 184 ILNQEQVINPDGSYKWSYETGNGISAEEQ 270
           ++N   +IN DG+Y+   E G G+S   Q
Sbjct: 533 VMNDLSIINSDGTYQEGAEPGQGVSLNVQ 561


>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
          Length = 2053

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 423 CCWQVGTLWLEPIFIRQILDVYNLTV 346
           CC+QVG   ++   I  +LD+ NLT+
Sbjct: 604 CCYQVGNFDIQSSAISTLLDLINLTL 629


>SB_1301| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 423 CCWQVGTLWLEPIFIRQILDVYNLTV 346
           CC+QVG   ++   I  +LD+ NLT+
Sbjct: 15  CCYQVGNFDIQSSAISTLLDLINLTL 40


>SB_47596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 657

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = +3

Query: 399 TRCPLANSTARPSRDTKSSRLLGY 470
           TR PLA ST   S  TKSS L+ Y
Sbjct: 244 TRIPLARSTGGSSAATKSSILINY 267


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.134    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,769,445
Number of Sequences: 59808
Number of extensions: 319750
Number of successful extensions: 548
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)