Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305G02f
         (521 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC116183-1|AAI16184.1| 1589|Homo sapiens myomesin 1, 185kDa prot...    33   0.46 
AK125322-1|BAC86128.1| 1685|Homo sapiens protein ( Homo sapiens ...    33   0.46 
AJ621424-1|CAF18565.1| 1685|Homo sapiens myomesin 1 protein.           33   0.46 
X69090-1|CAA48833.1| 1451|Homo sapiens 190kD protein protein.          33   0.80 
AK057372-1|BAB71456.1|  391|Homo sapiens protein ( Homo sapiens ...    29   7.5  

>BC116183-1|AAI16184.1| 1589|Homo sapiens myomesin 1, 185kDa
           protein.
          Length = 1589

 Score = 33.5 bits (73), Expect = 0.46
 Identities = 24/72 (33%), Positives = 33/72 (45%)
 Frame = -1

Query: 518 SRMSDVFSSVLCRSGSVAKKSRAFCISAGTGGAVGKWAPCGWNPFSSARYWTCIT*PSGA 339
           SR +D    V       AK+   + I A   G+ GKW PC  NP   +R+ TC    +G 
Sbjct: 748 SRNTDTSVVVSWEESKDAKELVGYYIEASVAGS-GKWEPCNNNPVKGSRF-TCHGLVTGQ 805

Query: 338 VY*YWPCAVCAS 303
            Y +   AV A+
Sbjct: 806 SYIFRVRAVNAA 817


>AK125322-1|BAC86128.1| 1685|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43332 fis, clone NT2RI3006340, highly  similar
           to Myomesin 1. ).
          Length = 1685

 Score = 33.5 bits (73), Expect = 0.46
 Identities = 24/72 (33%), Positives = 33/72 (45%)
 Frame = -1

Query: 518 SRMSDVFSSVLCRSGSVAKKSRAFCISAGTGGAVGKWAPCGWNPFSSARYWTCIT*PSGA 339
           SR +D    V       AK+   + I A   G+ GKW PC  NP   +R+ TC    +G 
Sbjct: 748 SRNTDTSVVVSWEESKDAKELVGYYIEASVAGS-GKWEPCNNNPVKGSRF-TCHGLVTGQ 805

Query: 338 VY*YWPCAVCAS 303
            Y +   AV A+
Sbjct: 806 SYIFRVRAVNAA 817


>AJ621424-1|CAF18565.1| 1685|Homo sapiens myomesin 1 protein.
          Length = 1685

 Score = 33.5 bits (73), Expect = 0.46
 Identities = 24/72 (33%), Positives = 33/72 (45%)
 Frame = -1

Query: 518 SRMSDVFSSVLCRSGSVAKKSRAFCISAGTGGAVGKWAPCGWNPFSSARYWTCIT*PSGA 339
           SR +D    V       AK+   + I A   G+ GKW PC  NP   +R+ TC    +G 
Sbjct: 748 SRNTDTSVVVSWEESKDAKELVGYYIEASVAGS-GKWEPCNNNPVKGSRF-TCHGLVTGQ 805

Query: 338 VY*YWPCAVCAS 303
            Y +   AV A+
Sbjct: 806 SYIFRVRAVNAA 817


>X69090-1|CAA48833.1| 1451|Homo sapiens 190kD protein protein.
          Length = 1451

 Score = 32.7 bits (71), Expect = 0.80
 Identities = 24/72 (33%), Positives = 33/72 (45%)
 Frame = -1

Query: 518 SRMSDVFSSVLCRSGSVAKKSRAFCISAGTGGAVGKWAPCGWNPFSSARYWTCIT*PSGA 339
           SR +D    V       AK+   + I A   G+ GKW PC  NP  + R+ TC    +G 
Sbjct: 611 SRNTDTSVVVSWEESKDAKELVGYYIEANVAGS-GKWEPCNNNPVKTHRF-TCHGLVTGQ 668

Query: 338 VY*YWPCAVCAS 303
            Y +   AV A+
Sbjct: 669 SYIFRVRAVNAA 680


>AK057372-1|BAB71456.1|  391|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32810 fis, clone TESTI2002729, weakly similar to
           Homo sapiens mRNA for oligophrenin 1. ).
          Length = 391

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = -1

Query: 482 RSGSVAKKSRAFCISAGTGGAVGKWAPCGWNPFSSARYWTCIT*PSGAV 336
           RSGS  +++RA C+S G+    G++ PC   P S +   +  + P G++
Sbjct: 160 RSGS--RRTRAICLSTGSRKPRGRYTPCLAEPDSDSYSSSPDSTPMGSI 206


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.314    0.134    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,291,836
Number of Sequences: 237096
Number of extensions: 1596617
Number of successful extensions: 2738
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2738
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)