Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305G02f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 34 0.071
U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction... 28 3.5
U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction... 28 3.5
U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction... 28 3.5
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction... 28 3.5
Z99773-4|CAB16925.1| 342|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z99773-1|CAB16923.2| 406|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z50110-5|CAA90447.1| 342|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z47074-1|CAA87375.2| 851|Caenorhabditis elegans Hypothetical pr... 28 4.7
AF083878-1|AAD48898.1| 342|Caenorhabditis elegans cyclin-depend... 28 4.7
U80839-16|AAB37910.1| 149|Caenorhabditis elegans Hypothetical p... 27 6.2
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 33.9 bits (74), Expect = 0.071
Identities = 19/76 (25%), Positives = 34/76 (44%)
Frame = +1
Query: 49 SSFQQFQHQPNYLQQVQPINSLYAKXXXXXXXXXXXTVHNTEPIPILNQEQVINPDGSYK 228
S +QF H+P ++++ P+ + YA T +++P P + Q I P +
Sbjct: 177 SVHEQFNHRPAHVEEEIPLENHYAPPPHQQIPDDLNTSFSSQPPPPIEQFGAIPPPNATI 236
Query: 229 WSYETGNGISAEEQGY 276
S+ T N S Q +
Sbjct: 237 PSFPTSNAASPPVQEF 252
>U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction
molecule protein1, isoform b protein.
Length = 944
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = +2
Query: 200 RSSIPMDHISGVTRQEMEFQLKSRAT*KTREYLNKRRRRHRANINILRLTVKLY 361
RS +DHI ++ +F+L+ R +E +N+++ ++ + +LT +Y
Sbjct: 725 RSRDKLDHIVRERSEKEQFELEKRRLLAEKEAMNRKKNHLLSSETLAKLTQPMY 778
>U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction
molecule protein1, isoform c protein.
Length = 1148
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = +2
Query: 200 RSSIPMDHISGVTRQEMEFQLKSRAT*KTREYLNKRRRRHRANINILRLTVKLY 361
RS +DHI ++ +F+L+ R +E +N+++ ++ + +LT +Y
Sbjct: 725 RSRDKLDHIVRERSEKEQFELEKRRLLAEKEAMNRKKNHLLSSETLAKLTQPMY 778
>U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction
molecule protein1, isoform d protein.
Length = 1439
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = +2
Query: 200 RSSIPMDHISGVTRQEMEFQLKSRAT*KTREYLNKRRRRHRANINILRLTVKLY 361
RS +DHI ++ +F+L+ R +E +N+++ ++ + +LT +Y
Sbjct: 725 RSRDKLDHIVRERSEKEQFELEKRRLLAEKEAMNRKKNHLLSSETLAKLTQPMY 778
>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
molecule protein1, isoform a protein.
Length = 1480
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = +2
Query: 200 RSSIPMDHISGVTRQEMEFQLKSRAT*KTREYLNKRRRRHRANINILRLTVKLY 361
RS +DHI ++ +F+L+ R +E +N+++ ++ + +LT +Y
Sbjct: 725 RSRDKLDHIVRERSEKEQFELEKRRLLAEKEAMNRKKNHLLSSETLAKLTQPMY 778
>Z99773-4|CAB16925.1| 342|Caenorhabditis elegans Hypothetical
protein F18H3.5a protein.
Length = 342
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 397 PQGAHLPTAPPVPAEIQKALDFLATLPLRHKTLENTSDILD 519
P+G A V A+I +ALDFL T + H+ L+ + +L+
Sbjct: 138 PRGVPEQQAKHVTAQIVRALDFLHTHSIIHRDLKPQNILLN 178
>Z99773-1|CAB16923.2| 406|Caenorhabditis elegans Hypothetical
protein F18H3.5b protein.
Length = 406
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 397 PQGAHLPTAPPVPAEIQKALDFLATLPLRHKTLENTSDILD 519
P+G A V A+I +ALDFL T + H+ L+ + +L+
Sbjct: 202 PRGVPEQQAKHVTAQIVRALDFLHTHSIIHRDLKPQNILLN 242
>Z50110-5|CAA90447.1| 342|Caenorhabditis elegans Hypothetical
protein F18H3.5a protein.
Length = 342
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 397 PQGAHLPTAPPVPAEIQKALDFLATLPLRHKTLENTSDILD 519
P+G A V A+I +ALDFL T + H+ L+ + +L+
Sbjct: 138 PRGVPEQQAKHVTAQIVRALDFLHTHSIIHRDLKPQNILLN 178
>Z47074-1|CAA87375.2| 851|Caenorhabditis elegans Hypothetical
protein K07C10.1 protein.
Length = 851
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 255 NSISCLVTPLI*SIGIDDLFLI 190
NSI C+ LI IG+DD FL+
Sbjct: 320 NSIMCITPFLILGIGVDDAFLL 341
>AF083878-1|AAD48898.1| 342|Caenorhabditis elegans cyclin-dependent
kinase CDK-4 protein.
Length = 342
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 397 PQGAHLPTAPPVPAEIQKALDFLATLPLRHKTLENTSDILD 519
P+G A V A+I +ALDFL T + H+ L+ + +L+
Sbjct: 138 PRGVPEQQAKHVTAQIVRALDFLHTHSIIHRDLKPQNILLN 178
>U80839-16|AAB37910.1| 149|Caenorhabditis elegans Hypothetical
protein ZC204.1 protein.
Length = 149
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 1 YIIIVATLVSVGLADVSSFQQFQHQPNYLQQ 93
Y +++A ++ VGLA S + ++QP +QQ
Sbjct: 7 YFLVLAAILDVGLASYDSPRFLRNQPRSVQQ 37
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.314 0.134 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,635,150
Number of Sequences: 27780
Number of extensions: 240300
Number of successful extensions: 510
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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