Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305G02f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    90   1e-20
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    22   4.4  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   4.4  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 89.8 bits (213), Expect = 1e-20
 Identities = 44/98 (44%), Positives = 61/98 (62%)
 Frame = +1

Query: 184 ILNQEQVINPDGSYKWSYETGNGISAEEQGYIKNQGIPXXXXXXXXXXXXXXAPDGQVIH 363
           I +Q+  +N DG+Y  ++ET NGIS +E G  K   +               APDGQ + 
Sbjct: 29  ITSQQLEVNFDGNYINNFETSNGISHQESGQPKQ--VDNETPVVSQGSDSYTAPDGQQVS 86

Query: 364 VQYLADENGFQPQGAHLPTAPPVPAEIQKALDFLATLP 477
           + Y+ADENGFQ QG+H+PTAPP+P EIQ+AL++ A  P
Sbjct: 87  ITYVADENGFQVQGSHIPTAPPIPPEIQRALEWNAAHP 124


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 210 IDDLFLIKYGNRF 172
           IDD FL K G+RF
Sbjct: 165 IDDHFLFKEGDRF 177


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 210 IDDLFLIKYGNRF 172
           IDD FL K G+RF
Sbjct: 181 IDDHFLFKEGDRF 193


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.134    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,704
Number of Sequences: 438
Number of extensions: 2977
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)