Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305G02f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g20850.1 68417.m03025 subtilase family protein contains simil...    28   4.4  
At2g45720.1 68415.m05686 armadillo/beta-catenin repeat family pr...    27   5.8  
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    27   7.7  

>At4g20850.1 68417.m03025 subtilase family protein contains
           similarity to Tripeptidyl-peptidase II (EC 3.4.14.10)
           (TPP-II) (Tripeptidyl aminopeptidase)
           (Swiss-Prot:P29144) [Homo sapiens]
          Length = 1380

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 500 FSSVLCRSGSVAKKSRAFCISAGTGGAVG 414
           FS++ C S      SR  C   G GGAVG
Sbjct: 66  FSAMPCSSSDTLTASRVGCGGGGGGGAVG 94


>At2g45720.1 68415.m05686 armadillo/beta-catenin repeat family
           protein contains Pfam profile PF00514:
           Armadillo/beta-catenin-like repeat
          Length = 553

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 347 TVKLYTSNIWRMKMGSSHKVPTCQQHRPSQPRYKK 451
           TVK ++S  WR+ +    K+PTC     S P + K
Sbjct: 36  TVKGFSSR-WRVIISRLEKIPTCLSDLSSHPCFSK 69


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 18   YPGVRGLS*CKQ-LPAVSTSTELFTTSSAYQFIICK 122
            +PG++ LS   Q L A+ +ST L    S  QF++CK
Sbjct: 3677 HPGLQKLSGVLQMLLAIPSSTPLAKALSGLQFLLCK 3712


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.134    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,049,448
Number of Sequences: 28952
Number of extensions: 220865
Number of successful extensions: 435
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)