Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305G01f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1071.12c |stp1|SPAC926.01c|low molecular weight phosphotyros... 129 2e-31
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp... 27 1.7
SPBC14C8.05c |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharo... 27 1.7
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 2.2
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 26 3.0
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 26 3.9
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc... 26 3.9
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 25 5.2
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom... 25 5.2
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 25 6.8
SPAC19G12.03 |cda1||chitin deacetylase Cda1|Schizosaccharomyces ... 25 9.0
>SPAC1071.12c |stp1|SPAC926.01c|low molecular weight phosphotyrosine
protein phosphatase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 156
Score = 129 bits (312), Expect = 2e-31
Identities = 57/116 (49%), Positives = 82/116 (70%), Gaps = 1/116 (0%)
Frame = +2
Query: 161 KALFICLGNICRSPIAEAVFQKTVNDMNLGEHWD-IDSAAIGGWHVGNPPDWRALDTLKK 337
+ LF+CLGNICRSP+AEAVF+ V L +D IDS G WHVGN PD R L+ LKK
Sbjct: 6 QVLFVCLGNICRSPMAEAVFRNEVEKAGLEARFDTIDSCGTGAWHVGNRPDPRTLEVLKK 65
Query: 338 HNVPYNNHARQITSEDFDYYDYIFGMDESNMKDLNKKAPKGSKAKLLLFGDFDPQG 505
+ + + AR++++ DF +DYIF MD SN++++N+ P+GS+AK++LFG++ G
Sbjct: 66 NGIHTKHLARKLSTSDFKNFDYIFAMDSSNLRNINRVKPQGSRAKVMLFGEYASPG 121
>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -2
Query: 490 ISK*Q*FRFTPFRSFFVQIFHIGFIHTKDIIIIIEVFRSYLSCMVVVWNV 341
I+K Q + T F + H+ F H K I I+ + R YL +++ N+
Sbjct: 308 INKNQAIQLTGFDVSARSLRHVPFHHPKQIRGILAIVRQYLLLQLILENI 357
>SPBC14C8.05c
|meu17||glucan-alpha-1,4-glucosidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 450
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 197 SPIAEAVFQKTVN--DMNLGEHWDIDSAAIGGW 289
+P A++Q+T+ D+ LGE WD I G+
Sbjct: 235 APDQAALYQRTIEPIDLKLGEFWDPGMGVIKGY 267
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.6 bits (56), Expect = 2.2
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 44 AQYKIKEYLQN*NTNSLVIDGNQRESSIKLALKMVDHKKKALFICLGNICRSPIAEAVFQ 223
A + K +L N NS++ + + + ++ A K V KKA I L ++ R P+A +
Sbjct: 3176 ASLQKKSFLLNEKKNSVMKEVSYAKPAVIEARKSVSDIKKAHLIELRSLSRPPMAIRITM 3235
Query: 224 KTV 232
+ V
Sbjct: 3236 EVV 3238
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 3.0
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = -3
Query: 315 LQSGGLPTCQPPIAALSISQCSPRFMSFTVFWKTAS-AIGDRHIL-PRQINNAFFL 154
+Q GL +PP A + I + RF + T WKT ++G I PR N++F L
Sbjct: 276 IQISGLK--RPPQATVVIGRQITRFGTLTARWKTGVWSLGSWGIASPRGANSSFSL 329
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = +2
Query: 371 ITSEDFDYYDYIFGMDESNMKDLNKKAPKGSKAKLLLFGDFDPQGDRII 517
+ S+ D + Y FG+ +K++ + G A+L L DP + ++
Sbjct: 1166 LQSQRLDEFMYGFGIISMKLKEMYQIITMGGNAELELVDSLDPFSEGVL 1214
>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1050
Score = 25.8 bits (54), Expect = 3.9
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = -3
Query: 312 QSGGLPTCQPPIAALSISQCSPRFMSFTVFWKTASAIGDRHILPRQINNAFFLWSTI 142
+S PP++ + P S F +T S+ G+R + P+Q N + STI
Sbjct: 885 RSASFDKSAPPLSVPLSFRLGPHMHSVKSF-ETESSFGNRSLSPKQENRRTYSDSTI 940
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1254
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 339 CFFKVSSALQSGGLPTCQPPI 277
CFF +S A + G P C+P I
Sbjct: 959 CFFSLSQAAAALGEPYCRPEI 979
>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 412
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +2
Query: 131 LALKMVDHKKKALFICLGNICRSPIAEAVFQKTVNDMNLGEHWDID 268
LALK +D K +C G + R+ + + + T+ + EH D
Sbjct: 307 LALKRLDLSKVKYLVCSGGVARNELLKKMLNDTLMVLQF-EHQPTD 351
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2
Query: 257 WDIDSAAIGGWHVGNPPDWRALDTLKK 337
W DS W NP DWR D L++
Sbjct: 482 WFEDSLNSEIWSDANPLDWRKTDILEE 508
>SPAC19G12.03 |cda1||chitin deacetylase Cda1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 311 WRALDTLKKHNVPY 352
WR L+ KKH VP+
Sbjct: 84 WRILNLFKKHKVPF 97
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,216,917
Number of Sequences: 5004
Number of extensions: 48344
Number of successful extensions: 115
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -