Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305G01f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1562 - 27881885-27881962,27882801-27882887,27883971-278840...    77   7e-15
06_01_0558 - 3968211-3969475,3970198-3970266,3970374-3970529,397...    32   0.24 
05_05_0362 + 24415257-24415481,24415585-24415835,24416659-244167...    28   4.0  
04_03_0643 + 18328807-18331969,18332560-18332627                       28   4.0  
10_02_0058 - 4695400-4695648,4695846-4696112,4706026-4706430           27   6.9  
10_01_0249 - 2601376-2601547,2611800-2612464,2612549-2613055           27   9.1  
04_03_0500 + 16585157-16585201,16586840-16586978,16587456-165875...    27   9.1  
03_03_0090 + 14367033-14367279,14367402-14368205,14368314-143700...    27   9.1  

>08_02_1562 -
           27881885-27881962,27882801-27882887,27883971-27884048,
           27884100-27884267,27884353-27884465,27885360-27885684
          Length = 282

 Score = 77.4 bits (182), Expect = 7e-15
 Identities = 39/92 (42%), Positives = 50/92 (54%)
 Frame = +2

Query: 167 LFICLGNICRSPIAEAVFQKTVNDMNLGEHWDIDSAAIGGWHVGNPPDWRALDTLKKHNV 346
           LF+CLGNICRSP AEAVF+  V+   L   + IDSA   G+H GN  D R     KK  +
Sbjct: 104 LFVCLGNICRSPAAEAVFRNLVSKRGLESKFLIDSAGTIGYHEGNKADSRMRSASKKRGI 163

Query: 347 PYNNHARQITSEDFDYYDYIFGMDESNMKDLN 442
              + +R +   DF  +D I  MD  N   L+
Sbjct: 164 EVTSISRPVKPSDFRDFDLILAMDRQNYGTLS 195


>06_01_0558 -
           3968211-3969475,3970198-3970266,3970374-3970529,
           3971075-3971405
          Length = 606

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 287 WHVGNPPDWRALDTLKKHNVPYNNHARQITSEDFD 391
           W  GNPPDW + D  +   V  ++   ++T+ D D
Sbjct: 38  WPAGNPPDWSSRDCCRWERVTCSSITGRVTALDLD 72


>05_05_0362 +
           24415257-24415481,24415585-24415835,24416659-24416755,
           24417272-24417820,24418029-24418482,24418747-24418860,
           24418940-24419023,24419499-24420067
          Length = 780

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +2

Query: 107 NQRESSIKLALKMVDHKKKALFICLGNICRSPIAEAVFQKTVNDMNLGEHW 259
           N  E ++ +  K     K A F  + N  + P+A AVF   +  +N  E W
Sbjct: 457 NHVERTLGVVKKRFPILKVATFHKIENQVKIPVAAAVFHNIIRSLNGDEQW 507


>04_03_0643 + 18328807-18331969,18332560-18332627
          Length = 1076

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = +2

Query: 203 IAEAVFQKTVNDMNLGEHWDIDSAAIGGWHVGNPPDWRALDTLKKHNVPYNNHARQITSE 382
           IA+   Q T   + L  HW+++   I  +   + P W   D LK          R I S 
Sbjct: 726 IADEQLQMTEEQIELLPHWNLEHLIIKNYLGQSCPSWLQPDCLKVLTSLELYGCRNIQS- 784

Query: 383 DFDYYDYIFG-MDESN 427
              ++D +F  ++ESN
Sbjct: 785 -LSFFDPLFSDLEESN 799


>10_02_0058 - 4695400-4695648,4695846-4696112,4706026-4706430
          Length = 306

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/63 (25%), Positives = 26/63 (41%)
 Frame = +2

Query: 173 ICLGNICRSPIAEAVFQKTVNDMNLGEHWDIDSAAIGGWHVGNPPDWRALDTLKKHNVPY 352
           IC G IC   + +A   + +ND  L           GGW V +    + +D L+  +   
Sbjct: 151 ICAGKICSPEVCDAYALQFMNDFTLFLESRGKEIIPGGWLVISVKGRKCIDNLRSGDTRM 210

Query: 353 NNH 361
            +H
Sbjct: 211 WDH 213


>10_01_0249 - 2601376-2601547,2611800-2612464,2612549-2613055
          Length = 447

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +2

Query: 107 NQRESSIKLALKMVDHKKKALFICLGNICRSPIAEAVFQKTVNDMNLGEHW 259
           N  E ++ +  K     K A F  + N  + P+A AVF   +  +N  E W
Sbjct: 295 NHVERTLGVVKKRFPILKVATFHKIKNQVKIPVAAAVFHNIILSLNGDEQW 345


>04_03_0500 +
           16585157-16585201,16586840-16586978,16587456-16587577,
           16588850-16588900,16589289-16589601,16592816-16593162
          Length = 338

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 297 PTCQPPIAALSISQCSPRFMSFTVFWKTASAIGDRHILPR 178
           P   PP+A  S+++  P      +  K AS +  RH  PR
Sbjct: 267 PNRVPPLAFPSVARAQPMEEQLVLLMKEASGLELRHCQPR 306


>03_03_0090 +
           14367033-14367279,14367402-14368205,14368314-14370039,
           14370135-14370219,14370398-14370457,14370744-14370836
          Length = 1004

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 303 GLPTCQPPIAALSISQCS 250
           GLP C P + +L +S+CS
Sbjct: 173 GLPDCNPKLNSLDVSKCS 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,607,158
Number of Sequences: 37544
Number of extensions: 290496
Number of successful extensions: 681
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)