Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305G01f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26576| Best HMM Match : LMWPc (HMM E-Value=5.60519e-45)            125   2e-29
SB_23053| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.44 
SB_28905| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_7381| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.1  
SB_46752| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_563| Best HMM Match : Ank (HMM E-Value=0)                           27   7.1  
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_26576| Best HMM Match : LMWPc (HMM E-Value=5.60519e-45)
          Length = 620

 Score =  125 bits (302), Expect = 2e-29
 Identities = 57/125 (45%), Positives = 75/125 (60%)
 Frame = +2

Query: 143 MVDHKKKALFICLGNICRSPIAEAVFQKTVNDMNLGEHWDIDSAAIGGWHVGNPPDWRAL 322
           M D  +  LF+CLGNICRSP +EA+ +  +    L + W +DSAAIG WHVG  PD R L
Sbjct: 1   MADECRSVLFVCLGNICRSPTSEAILRHLLAQKGLDKQWKLDSAAIGPWHVGKRPDRRGL 60

Query: 323 DTLKKHNVPYNNHARQITSEDFDYYDYIFGMDESNMKDLNKKAPKGSKAKLLLFGDFDPQ 502
              K+  VP  + ARQ+  EDF  +  I   D+ N++DL +  PK   AK+ LFG +DP 
Sbjct: 61  AIQKREGVPNTHRARQVCEEDFREFGLILAFDDENVQDLEQLRPKDGTAKVELFGKYDPD 120

Query: 503 GDRII 517
           G  II
Sbjct: 121 GVTII 125


>SB_23053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 497

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = -1

Query: 404 YNHN-NRSLQKLFVLHGCCMERYASSKYLVLSNREDYRHASPR*LHYRYPNVHPDSCHLR 228
           +N N NR L K   +  C   R A   +   +    Y +A  + +H  YPN  P + HL 
Sbjct: 5   WNENVNRRLAKH--IFECMNARNAKLLHNAQTIHLVYPNAQAQTIHLVYPNAQPQTIHLV 62

Query: 227 FSGKQPQQL 201
           +   QPQ +
Sbjct: 63  YPNAQPQTI 71


>SB_28905| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -2

Query: 454 RSFFVQIFHIGFIHTKDIIIIIEVFRSYLSCMVVVWNVMLLQSI*CSPIGR 302
           R FF+   H   +  +D  I   V         ++ NV+L++++ CSP+ R
Sbjct: 17  RCFFLVYDHQRILLARDAYIAAAVINCITMFPAIILNVLLMRAMSCSPVLR 67


>SB_7381| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 249 VNIGISIVQLSGAGMSVILPIGEH*IL*RSITFHTTTMQD 368
           VN+ ++I Q+  A  +V+  +G + +    ITF   T+QD
Sbjct: 42  VNVNVNITQMRHANNTVVNSVGRNLVSRLKITFAGETLQD 81


>SB_46752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 686

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 320 LDTLKKHNVPYNNHARQITSEDFDYYDYIFGM 415
           +D ++ H + YNNH + I+ + F  Y  +  M
Sbjct: 585 IDHIQSHPIAYNNHIKGISPKKFHRYKRLSNM 616


>SB_563| Best HMM Match : Ank (HMM E-Value=0)
          Length = 753

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
 Frame = -3

Query: 366 LAWLLYGTLCFFKVSS--ALQSGGLPTCQPPIAALSISQCSPRFMSFTVFWKTASAIGDR 193
           L W++Y T   F       ++  G   C+   + +        +MS  +F +     G  
Sbjct: 658 LEWIVYTTAIAFVAPEFQGVKEYGFSKCREWFSTVGAISIWSAWMSLVLFIRKFPLFGIY 717

Query: 192 HILPRQINNAFFLWSTIF 139
            ++   I N F ++STIF
Sbjct: 718 VVMFTDILNTFLMFSTIF 735


>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/64 (23%), Positives = 29/64 (45%)
 Frame = +2

Query: 209 EAVFQKTVNDMNLGEHWDIDSAAIGGWHVGNPPDWRALDTLKKHNVPYNNHARQITSEDF 388
           +A   K VND+    +      A+GGW++G+ P    + T  +  +  ++    + +  F
Sbjct: 74  DAAMYKKVNDLKSSSNMKT-LLAVGGWNMGSGPFQDMVSTASRRKIFIDDAILFLRNHMF 132

Query: 389 DYYD 400
           D  D
Sbjct: 133 DGLD 136


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,963,813
Number of Sequences: 59808
Number of extensions: 339467
Number of successful extensions: 843
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)