Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305G01f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.1  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   1.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.5  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   5.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.7  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 371 ITSEDFDYYDYIFGMDESNMKDLNKKAPKGSKAKLL 478
           I SE  D Y+    M + + K L+   PKGSK  ++
Sbjct: 256 IKSEPIDAYE----MHQISKKKLSPATPKGSKCSMI 287


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = +2

Query: 353 NNHARQITSEDFDYYDYIFGMDESNMKDL 439
           +N  ++I ++DF++ D  F +  +N+K+L
Sbjct: 380 SNRMQKIVNDDFNFDDVNFRILGANVKEL 408


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = +2

Query: 158 KKALFICLGNICRSPIAEAVFQKTVNDMNLGEHWDIDSAAIGG 286
           K AL +C  N C S ++  V    V  M   +   +   A+ G
Sbjct: 313 KDALIVCTVNSCTSMLSGIVIFSVVGFMAHEQQKPVADVAVSG 355


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 347 ERYASSKYLVLSNREDYRHASPR 279
           ++YA+S   + S   D++H S R
Sbjct: 208 KKYATSSNSLRSRTHDFQHTSSR 230


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = +2

Query: 158 KKALFICLGNICRSPIAEAVFQKTVNDMNLGEHWDIDSAAIGG 286
           K AL +C  N C S ++  V    V  M   +   +   A  G
Sbjct: 366 KDALIVCTVNSCTSMLSGIVIFSVVGFMAHEQQKPVADVAASG 408


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,728
Number of Sequences: 438
Number of extensions: 3750
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)