Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305F12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    23   1.4  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    23   1.4  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    22   3.3  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    22   3.3  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    22   3.3  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    22   3.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   5.8  

>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 126 TINPQDETVITQVAEGDK 179
           TINP+D  +I +  EG K
Sbjct: 154 TINPEDVILIRRTGEGSK 171


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 126 TINPQDETVITQVAEGDK 179
           TINP+D  +I +  EG K
Sbjct: 154 TINPEDVILIRRTGEGSK 171


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 129 INPQDETVITQVAEGDKADI 188
           + PQ+ET++T V+    +D+
Sbjct: 116 VRPQNETILTTVSSEADSDV 135


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 129 INPQDETVITQVAEGDKADI 188
           + PQ+ET++T V+    +D+
Sbjct: 164 VRPQNETILTTVSSEADSDV 183


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 129 INPQDETVITQVAEGDKADI 188
           + PQ+ET++T V+    +D+
Sbjct: 164 VRPQNETILTTVSSEADSDV 183


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 129 INPQDETVITQVAEGDKADI 188
           + PQ+ET++T V+    +D+
Sbjct: 164 VRPQNETILTTVSSEADSDV 183


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 75  LFINNEWVDAVSKKTF 122
           LFINN +++ V   TF
Sbjct: 622 LFINNNYINLVRPNTF 637


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 132 NPQDETVITQVAEGDKADIDLAVAAAKKAFHRYSPWRTMD 251
           N     ++TQVAE D+   D      + AF + +  ++MD
Sbjct: 534 NKSFNDLLTQVAELDQIYADTHAKLVQAAFEQNTTDQSMD 573


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 312 YLAELETLDCGKPVKQSEEEVYFSASVLRYYAGKADK 422
           Y +E   L  GKP K+  E   +S    +Y+   A+K
Sbjct: 528 YFSEFAYL--GKPTKEDSEWPSYSRDEPKYFIFDAEK 562


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,221
Number of Sequences: 438
Number of extensions: 3291
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)